That darn "libtoolize: AC_CONFIG_MACRO_DIR([m4]) conflicts with ACLOCAL_AMFLAGS=-I m4" error

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Is caused by using CRLFs in Makefile.am. "m4<CR>" != "m4" and thus the libtoolize script will produce an error.

If you're using git, I strongly advise adding a .gitattributes file with the following:
*.sh     -crlf*.ac     -crlf*.am     -crlf
http://pete.akeo.ie/2010/12/that-darn-libtoolize-acconfigmacrodirm4.html
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