基因数据处理2之ftp数据快速查找

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基因数据处理2之ftp数据快速查找

linux下可以用grep:

curl -s "ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/current.tree" | grep NA12878

运行结果：

hadoop@Mcnode1:~/cloud/adam/xubo/testAdam34/TestBaiBas$ curl -s "ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/current.tree" | grep NA12878 ftp/data_collections/illumina_platinum_pedigree/data/CEU/NA12878/alignmentdirectory263Wed Oct 14 20:45:44 2015ftp/data_collections/illumina_platinum_pedigree/data/CEU/NA12878/alignment/NA12878.alt_bwamem_GRCh38DH.20150706.CEU.illumina_platinum_ped.bam.basfile632Fri Aug 28 15:03:38 2015c45e3abf5b6267b04b324c3f8658ab9aftp/data_collections/illumina_platinum_pedigree/data/CEU/NA12878/alignment/NA12878.alt_bwamem_GRCh38DH.20150706.CEU.illumina_platinum_ped.cramfile40218294392Wed Oct 14 06:58:50 20152e509230038fb75649eac43d76fb2eb6ftp/data_collections/illumina_platinum_pedigree/data/CEU/NA12878/alignment/NA12878.alt_bwamem_GRCh38DH.20150706.CEU.illumina_platinum_ped.cram.craifile2863337Wed Oct 14 08:11:03 201574d46dcb99d76c8aae4825c86366e8f2ftp/data_collections/1000_genomes_project/data/CEU/NA12878/exome_alignmentdirectory215Mon Nov  9 07:11:54 2015ftp/data_collections/1000_genomes_project/data/CEU/NA12878/exome_alignment/NA12878.alt_bwamem_GRCh38DH.20150826.CEU.exome.cram.craifile624787Sun Nov  8 07:34:07 201567e9508a470934f8d8840e941d449477ftp/data_collections/1000_genomes_project/data/CEU/NA12878/exome_alignment/NA12878.alt_bwamem_GRCh38DH.20150826.CEU.exome.bam.basfile4536Mon Sep 14 20:02:24 2015da952f31a8bdca3a135160b3cf2ccb9dftp/data_collections/1000_genomes_project/data/CEU/NA12878/exome_alignment/NA12878.alt_bwamem_GRCh38DH.20150826.CEU.exome.cramfile8582414634Sun Nov  8 07:34:04 20152b79e04b3c9b412d65cfd5f65c425fa0ftp/data_collections/1000_genomes_project/data/CEU/NA12878/alignmentdirectory236Thu Oct  8 15:05:08 2015ftp/data_collections/1000_genomes_project/data/CEU/NA12878/alignment/NA12878.alt_bwamem_GRCh38DH.20150718.CEU.low_coverage.cram.craifile376548Thu Oct  8 05:50:17 20159d1d429d386a1d94c8b9fb97251f5a87ftp/data_collections/1000_genomes_project/data/CEU/NA12878/alignment/NA12878.alt_bwamem_GRCh38DH.20150718.CEU.low_coverage.cramfile4629995965Thu Oct  8 05:50:14 20152a49236b3664cc1853b023e6b76ee41fftp/data_collections/1000_genomes_project/data/CEU/NA12878/alignment/NA12878.alt_bwamem_GRCh38DH.20150718.CEU.low_coverage.bam.basfile621Tue Sep  1 12:00:08 2015f51294f9c5b2c53d338fd8d6a44f0e9f

参考：

【1】 https://www.biostars.org/p/84137/

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