在spark中使用Hive报错error: not found: value sqlContext

raini@biyuzhe:~$ spark-shell 
16/05/15 19:03:54 WARN NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
16/05/15 19:03:54 INFO SecurityManager: Changing view acls to: raini
16/05/15 19:03:54 INFO SecurityManager: Changing modify acls to: raini
16/05/15 19:03:54 INFO SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(raini); users with modify permissions: Set(raini)
16/05/15 19:03:55 INFO HttpServer: Starting HTTP Server
16/05/15 19:03:55 INFO Utils: Successfully started service 'HTTP class server' on port 43214.
Welcome to
      ____              __
     / __/__  ___ _____/ /__
    _\ \/ _ \/ _ `/ __/  '_/
   /___/ .__/\_,_/_/ /_/\_\   version 1.6.1
      /_/


Using Scala version 2.10.5 (Java HotSpot(TM) 64-Bit Server VM, Java 1.7.0_79)
Type in expressions to have them evaluated.
Type :help for more information.
16/05/15 19:03:58 WARN Utils: Your hostname, biyuzhe resolves to a loopback address: 127.0.1.1, but we couldn't find any external IP address!
16/05/15 19:03:58 WARN Utils: Set SPARK_LOCAL_IP if you need to bind to another address
16/05/15 19:03:58 INFO SparkContext: Running Spark version 1.6.1
16/05/15 19:03:58 INFO SecurityManager: Changing view acls to: raini
16/05/15 19:03:58 INFO SecurityManager: Changing modify acls to: raini
16/05/15 19:03:58 INFO SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(raini); users with modify permissions: Set(raini)
16/05/15 19:03:58 INFO Utils: Successfully started service 'sparkDriver' on port 41382.
16/05/15 19:03:59 INFO Slf4jLogger: Slf4jLogger started
16/05/15 19:03:59 INFO Remoting: Starting remoting
16/05/15 19:03:59 INFO Remoting: Remoting started; listening on addresses :[akka.tcp://sparkDriverActorSystem@127.0.1.1:43151]
16/05/15 19:03:59 INFO Utils: Successfully started service 'sparkDriverActorSystem' on port 43151.
16/05/15 19:03:59 INFO SparkEnv: Registering MapOutputTracker
16/05/15 19:03:59 INFO SparkEnv: Registering BlockManagerMaster
16/05/15 19:03:59 INFO DiskBlockManager: Created local directory at /home/raini/app/tmp/spark/blockmgr-0f8d6a34-21cb-4640-b9ac-017313e5e641
16/05/15 19:03:59 INFO DiskBlockManager: Created local directory at /media/raini/Linux/tmp/blockmgr-0504bd06-f4d6-42e9-b716-dc77e4f2f8d3
16/05/15 19:03:59 INFO MemoryStore: MemoryStore started with capacity 511.5 MB
16/05/15 19:03:59 INFO SparkEnv: Registering OutputCommitCoordinator
16/05/15 19:03:59 INFO Utils: Successfully started service 'SparkUI' on port 4040.
16/05/15 19:03:59 INFO SparkUI: Started SparkUI at http://127.0.1.1:4040
16/05/15 19:03:59 INFO Executor: Starting executor ID driver on host localhost
16/05/15 19:03:59 INFO Executor: Using REPL class URI: http://127.0.1.1:43214
16/05/15 19:03:59 INFO Utils: Successfully started service 'org.apache.spark.network.netty.NettyBlockTransferService' on port 32849.
16/05/15 19:03:59 INFO NettyBlockTransferService: Server created on 32849
16/05/15 19:03:59 INFO BlockManagerMaster: Trying to register BlockManager
16/05/15 19:03:59 INFO BlockManagerMasterEndpoint: Registering block manager localhost:32849 with 511.5 MB RAM, BlockManagerId(driver, localhost, 32849)
16/05/15 19:03:59 INFO BlockManagerMaster: Registered BlockManager
16/05/15 19:03:59 INFO SparkILoop: Created spark context..
Spark context available as sc.
16/05/15 19:04:00 INFO HiveContext: Initializing execution hive, version 1.2.1
16/05/15 19:04:00 INFO ClientWrapper: Inspected Hadoop version: 2.6.0
16/05/15 19:04:00 INFO ClientWrapper: Loaded org.apache.hadoop.hive.shims.Hadoop23Shims for Hadoop version 2.6.0
[Fatal Error] hive-site.xml:72:1: XML document structures must start and end within the same entity.
16/05/15 19:04:00 ERROR Configuration: error parsing conf file:/home/raini/app/spark-1.6.1-bin-hadoop2.6/conf/hive-site.xml
org.xml.sax.SAXParseException; systemId: file:/home/raini/app/spark-1.6.1-bin-hadoop2.6/conf/hive-site.xml; lineNumber: 72; columnNumber: 1; XML document structures must start and end within the same entity.

。。。（这里）

Caused by: org.datanucleus.exceptions.NucleusException: Attempt to invoke the "DBCP" plugin to create a ConnectionPool gave an error : The specified datastore driver ("com.mysql.jdbc.Driver") was not found in the CLASSPATH. Please check your CLASSPATH specification, and the name of the driver.
at org.datanucleus.store.rdbms.ConnectionFactoryImpl.generateDataSources(ConnectionFactoryImpl.java:259)
at org.datanucleus.store.rdbms.ConnectionFactoryImpl.initialiseDataSources(ConnectionFactoryImpl.java:131)
at org.datanucleus.store.rdbms.ConnectionFactoryImpl.<init>(ConnectionFactoryImpl.java:85)
... 125 more
Caused by: org.datanucleus.store.rdbms.connectionpool.DatastoreDriverNotFoundException: The specified datastore driver ("com.mysql.jdbc.Driver") was not found in the CLASSPATH. Please check your CLASSPATH specification, and the name of the driver.
at org.datanucleus.store.rdbms.connectionpool.AbstractConnectionPoolFactory.loadDriver(AbstractConnectionPoolFactory.java:58)
at org.datanucleus.store.rdbms.connectionpool.DBCPConnectionPoolFactory.createConnectionPool(DBCPConnectionPoolFactory.java:50)
at org.datanucleus.store.rdbms.ConnectionFactoryImpl.generateDataSources(ConnectionFactoryImpl.java:238)
... 127 more
16/05/15 19:17:19 INFO HiveMetaStore: 0: Opening raw store with implemenation class:org.apache.hadoop.hive.metastore.ObjectStore
16/05/15 19:17:19 INFO ObjectStore: ObjectStore, initialize called
16/05/15 19:17:19 WARN General: Plugin (Bundle) "org.datanucleus.store.rdbms" is already registered. Ensure you dont have multiple JAR versions of the same plugin in the classpath. The URL "file:/home/raini/spark/lib/datanucleus-rdbms-3.2.9.jar" is already registered, and you are trying to register an identical plugin located at URL "file:/home/raini/app/spark-1.6.1-bin-hadoop2.6/lib/datanucleus-rdbms-3.2.9.jar."
16/05/15 19:17:19 WARN General: Plugin (Bundle) "org.datanucleus" is already registered. Ensure you dont have multiple JAR versions of the same plugin in the classpath. The URL "file:/home/raini/spark/lib/datanucleus-core-3.2.10.jar" is already registered, and you are trying to register an identical plugin located at URL "file:/home/raini/app/spark-1.6.1-bin-hadoop2.6/lib/datanucleus-core-3.2.10.jar."
16/05/15 19:17:19 WARN General: Plugin (Bundle) "org.datanucleus.api.jdo" is already registered. Ensure you dont have multiple JAR versions of the same plugin in the classpath. The URL "file:/home/raini/app/spark-1.6.1-bin-hadoop2.6/lib/datanucleus-api-jdo-3.2.6.jar" is already registered, and you are trying to register an identical plugin located at URL "file:/home/raini/spark/lib/datanucleus-api-jdo-3.2.6.jar."
16/05/15 19:17:19 INFO Persistence: Property datanucleus.cache.level2 unknown - will be ignored
16/05/15 19:17:19 INFO Persistence: Property hive.metastore.integral.jdo.pushdown unknown - will be ignored
16/05/15 19:17:19 WARN Connection: BoneCP specified but not present in CLASSPATH (or one of dependencies)
16/05/15 19:17:19 WARN Hive: Failed to access metastore. This class should not accessed in runtime.
org.apache.hadoop.hive.ql.metadata.HiveException: java.lang.RuntimeException: Unable to instantiate org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient
at org.apache.hadoop.hive.ql.metadata.Hive.getAllDatabases(Hive.java:1236)
at org.apache.hadoop.hive.ql.metadata.Hive.reloadFunctions(Hive.java:174)
at org.apache.hadoop.hive.ql.metadata.Hive.<clinit>(Hive.java:166)
at org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:503)
at org.apache.spark.sql.hive.client.ClientWrapper.<init>(ClientWrapper.scala:204)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at org.apache.spark.sql.hive.client.IsolatedClientLoader.createClient(IsolatedClientLoader.scala:249)
at org.apache.spark.sql.hive.HiveContext.metadataHive$lzycompute(HiveContext.scala:327)
at org.apache.spark.sql.hive.HiveContext.metadataHive(HiveContext.scala:237)
at org.apache.spark.sql.hive.HiveContext.setConf(HiveContext.scala:441)
at org.apache.spark.sql.hive.HiveContext.defaultOverrides(HiveContext.scala:226)
at org.apache.spark.sql.hive.HiveContext.<init>(HiveContext.scala:229)
at org.apache.spark.sql.hive.HiveContext.<init>(HiveContext.scala:101)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at org.apache.spark.repl.SparkILoop.createSQLContext(SparkILoop.scala:1028)
at $line4.$read$$iwC$$iwC.<init>(<console>:15)
at $line4.$read$$iwC.<init>(<console>:24)
at $line4.$read.<init>(<console>:26)
at $line4.$read$.<init>(<console>:30)
at $line4.$read$.<clinit>(<console>)
at $line4.$eval$.<init>(<console>:7)
at $line4.$eval$.<clinit>(<console>)
at $line4.$eval.$print(<console>)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.spark.repl.SparkIMain$ReadEvalPrint.call(SparkIMain.scala:1065)
at org.apache.spark.repl.SparkIMain$Request.loadAndRun(SparkIMain.scala:1346)
at org.apache.spark.repl.SparkIMain.loadAndRunReq$1(SparkIMain.scala:840)
at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:871)
at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:819)
at org.apache.spark.repl.SparkILoop.reallyInterpret$1(SparkILoop.scala:857)
at org.apache.spark.repl.SparkILoop.interpretStartingWith(SparkILoop.scala:902)
at org.apache.spark.repl.SparkILoop.command(SparkILoop.scala:814)
at org.apache.spark.repl.SparkILoopInit$$anonfun$initializeSpark$1.apply(SparkILoopInit.scala:132)
at org.apache.spark.repl.SparkILoopInit$$anonfun$initializeSpark$1.apply(SparkILoopInit.scala:124)
at org.apache.spark.repl.SparkIMain.beQuietDuring(SparkIMain.scala:324)
at org.apache.spark.repl.SparkILoopInit$class.initializeSpark(SparkILoopInit.scala:124)
at org.apache.spark.repl.SparkILoop.initializeSpark(SparkILoop.scala:64)
at org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1$$anonfun$apply$mcZ$sp$5.apply$mcV$sp(SparkILoop.scala:974)
at org.apache.spark.repl.SparkILoopInit$class.runThunks(SparkILoopInit.scala:159)
at org.apache.spark.repl.SparkILoop.runThunks(SparkILoop.scala:64)
at org.apache.spark.repl.SparkILoopInit$class.postInitialization(SparkILoopInit.scala:108)
at org.apache.spark.repl.SparkILoop.postInitialization(SparkILoop.scala:64)
at org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply$mcZ$sp(SparkILoop.scala:991)
at org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply(SparkILoop.scala:945)
at org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply(SparkILoop.scala:945)
at scala.tools.nsc.util.ScalaClassLoader$.savingContextLoader(ScalaClassLoader.scala:135)
at org.apache.spark.repl.SparkILoop.org$apache$spark$repl$SparkILoop$$process(SparkILoop.scala:945)
at org.apache.spark.repl.SparkILoop.process(SparkILoop.scala:1059)
at org.apache.spark.repl.Main$.main(Main.scala:31)
at org.apache.spark.repl.Main.main(Main.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.spark.deploy.SparkSubmit$.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:731)
at org.apache.spark.deploy.SparkSubmit$.doRunMain$1(SparkSubmit.scala:181)
at org.apache.spark.deploy.SparkSubmit$.submit(SparkSubmit.scala:206)
at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:121)
at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
Caused by: java.lang.RuntimeException: Unable to instantiate org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient
at org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1523)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.<init>(RetryingMetaStoreClient.java:86)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:132)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:104)
at org.apache.hadoop.hive.ql.metadata.Hive.createMetaStoreClient(Hive.java:3005)
at org.apache.hadoop.hive.ql.metadata.Hive.getMSC(Hive.java:3024)
at org.apache.hadoop.hive.ql.metadata.Hive.getAllDatabases(Hive.java:1234)
... 67 more
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1521)
... 73 more
Caused by: javax.jdo.JDOFatalInternalException: Error creating transactional connection factory
NestedThrowables:
java.lang.reflect.InvocationTargetException
at org.datanucleus.api.jdo.NucleusJDOHelper.getJDOExceptionForNucleusException(NucleusJDOHelper.java:587)
at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.freezeConfiguration(JDOPersistenceManagerFactory.java:788)
at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.createPersistenceManagerFactory(JDOPersistenceManagerFactory.java:333)
at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.getPersistenceManagerFactory(JDOPersistenceManagerFactory.java:202)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at javax.jdo.JDOHelper$16.run(JDOHelper.java:1965)
at java.security.AccessController.doPrivileged(Native Method)
at javax.jdo.JDOHelper.invoke(JDOHelper.java:1960)
at javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1166)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:808)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:701)
at org.apache.hadoop.hive.metastore.ObjectStore.getPMF(ObjectStore.java:365)
at org.apache.hadoop.hive.metastore.ObjectStore.getPersistenceManager(ObjectStore.java:394)
at org.apache.hadoop.hive.metastore.ObjectStore.initialize(ObjectStore.java:291)
at org.apache.hadoop.hive.metastore.ObjectStore.setConf(ObjectStore.java:258)
at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:73)
at org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133)
at org.apache.hadoop.hive.metastore.RawStoreProxy.<init>(RawStoreProxy.java:57)
at org.apache.hadoop.hive.metastore.RawStoreProxy.getProxy(RawStoreProxy.java:66)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.newRawStore(HiveMetaStore.java:593)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.getMS(HiveMetaStore.java:571)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.createDefaultDB(HiveMetaStore.java:624)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.init(HiveMetaStore.java:461)
at org.apache.hadoop.hive.metastore.RetryingHMSHandler.<init>(RetryingHMSHandler.java:66)
at org.apache.hadoop.hive.metastore.RetryingHMSHandler.getProxy(RetryingHMSHandler.java:72)
at org.apache.hadoop.hive.metastore.HiveMetaStore.newRetryingHMSHandler(HiveMetaStore.java:5762)
at org.apache.hadoop.hive.metastore.HiveMetaStoreClient.<init>(HiveMetaStoreClient.java:199)
at org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient.<init>(SessionHiveMetaStoreClient.java:74)
... 78 more
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at org.datanucleus.plugin.NonManagedPluginRegistry.createExecutableExtension(NonManagedPluginRegistry.java:631)
at org.datanucleus.plugin.PluginManager.createExecutableExtension(PluginManager.java:325)
at org.datanucleus.store.AbstractStoreManager.registerConnectionFactory(AbstractStoreManager.java:282)
at org.datanucleus.store.AbstractStoreManager.<init>(AbstractStoreManager.java:240)
at org.datanucleus.store.rdbms.RDBMSStoreManager.<init>(RDBMSStoreManager.java:286)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at org.datanucleus.plugin.NonManagedPluginRegistry.createExecutableExtension(NonManagedPluginRegistry.java:631)
at org.datanucleus.plugin.PluginManager.createExecutableExtension(PluginManager.java:301)
at org.datanucleus.NucleusContext.createStoreManagerForProperties(NucleusContext.java:1187)
at org.datanucleus.NucleusContext.initialise(NucleusContext.java:356)
at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.freezeConfiguration(JDOPersistenceManagerFactory.java:775)
... 107 more
Caused by: org.datanucleus.exceptions.NucleusException: Attempt to invoke the "DBCP" plugin to create a ConnectionPool gave an error : The specified datastore driver ("com.mysql.jdbc.Driver") was not found in the CLASSPATH. Please check your CLASSPATH specification, and the name of the driver.
at org.datanucleus.store.rdbms.ConnectionFactoryImpl.generateDataSources(ConnectionFactoryImpl.java:259)
at org.datanucleus.store.rdbms.ConnectionFactoryImpl.initialiseDataSources(ConnectionFactoryImpl.java:131)
at org.datanucleus.store.rdbms.ConnectionFactoryImpl.<init>(ConnectionFactoryImpl.java:85)
... 125 more
Caused by: org.datanucleus.store.rdbms.connectionpool.DatastoreDriverNotFoundException: The specified datastore driver ("com.mysql.jdbc.Driver") was not found in the CLASSPATH. Please check your CLASSPATH specification, and the name of the driver.
at org.datanucleus.store.rdbms.connectionpool.AbstractConnectionPoolFactory.loadDriver(AbstractConnectionPoolFactory.java:58)
at org.datanucleus.store.rdbms.connectionpool.DBCPConnectionPoolFactory.createConnectionPool(DBCPConnectionPoolFactory.java:50)
at org.datanucleus.store.rdbms.ConnectionFactoryImpl.generateDataSources(ConnectionFactoryImpl.java:238)
... 127 more
16/05/15 19:17:19 INFO HiveMetaStore: 0: Opening raw store with implemenation class:org.apache.hadoop.hive.metastore.ObjectStore
16/05/15 19:17:19 INFO ObjectStore: ObjectStore, initialize called
16/05/15 19:17:19 WARN General: Plugin (Bundle) "org.datanucleus.store.rdbms" is already registered. Ensure you dont have multiple JAR versions of the same plugin in the classpath. The URL "file:/home/raini/spark/lib/datanucleus-rdbms-3.2.9.jar" is already registered, and you are trying to register an identical plugin located at URL "file:/home/raini/app/spark-1.6.1-bin-hadoop2.6/lib/datanucleus-rdbms-3.2.9.jar."
16/05/15 19:17:19 WARN General: Plugin (Bundle) "org.datanucleus" is already registered. Ensure you dont have multiple JAR versions of the same plugin in the classpath. The URL "file:/home/raini/spark/lib/datanucleus-core-3.2.10.jar" is already registered, and you are trying to register an identical plugin located at URL "file:/home/raini/app/spark-1.6.1-bin-hadoop2.6/lib/datanucleus-core-3.2.10.jar."
16/05/15 19:17:19 WARN General: Plugin (Bundle) "org.datanucleus.api.jdo" is already registered. Ensure you dont have multiple JAR versions of the same plugin in the classpath. The URL "file:/home/raini/app/spark-1.6.1-bin-hadoop2.6/lib/datanucleus-api-jdo-3.2.6.jar" is already registered, and you are trying to register an identical plugin located at URL "file:/home/raini/spark/lib/datanucleus-api-jdo-3.2.6.jar."
16/05/15 19:17:19 INFO Persistence: Property datanucleus.cache.level2 unknown - will be ignored
16/05/15 19:17:19 INFO Persistence: Property hive.metastore.integral.jdo.pushdown unknown - will be ignored
16/05/15 19:17:19 WARN Connection: BoneCP specified but not present in CLASSPATH (or one of dependencies)
16/05/15 19:17:19 WARN HiveMetaStore: Retrying creating default database after error: Error creating transactional connection factory
javax.jdo.JDOFatalInternalException: Error creating transactional connection factory
at org.datanucleus.api.jdo.NucleusJDOHelper.getJDOExceptionForNucleusException(NucleusJDOHelper.java:587)
at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.freezeConfiguration(JDOPersistenceManagerFactory.java:788)
at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.createPersistenceManagerFactory(JDOPersistenceManagerFactory.java:333)
at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.getPersistenceManagerFactory(JDOPersistenceManagerFactory.java:202)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at javax.jdo.JDOHelper$16.run(JDOHelper.java:1965)
at java.security.AccessController.doPrivileged(Native Method)
at javax.jdo.JDOHelper.invoke(JDOHelper.java:1960)
at javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1166)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:808)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:701)
at org.apache.hadoop.hive.metastore.ObjectStore.getPMF(ObjectStore.java:365)
at org.apache.hadoop.hive.metastore.ObjectStore.getPersistenceManager(ObjectStore.java:394)
at org.apache.hadoop.hive.metastore.ObjectStore.initialize(ObjectStore.java:291)
at org.apache.hadoop.hive.metastore.ObjectStore.setConf(ObjectStore.java:258)
at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:73)
at org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133)
at org.apache.hadoop.hive.metastore.RawStoreProxy.<init>(RawStoreProxy.java:57)
at org.apache.hadoop.hive.metastore.RawStoreProxy.getProxy(RawStoreProxy.java:66)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.newRawStore(HiveMetaStore.java:593)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.getMS(HiveMetaStore.java:571)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.createDefaultDB(HiveMetaStore.java:620)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.init(HiveMetaStore.java:461)
at org.apache.hadoop.hive.metastore.RetryingHMSHandler.<init>(RetryingHMSHandler.java:66)
at org.apache.hadoop.hive.metastore.RetryingHMSHandler.getProxy(RetryingHMSHandler.java:72)
at org.apache.hadoop.hive.metastore.HiveMetaStore.newRetryingHMSHandler(HiveMetaStore.java:5762)
at org.apache.hadoop.hive.metastore.HiveMetaStoreClient.<init>(HiveMetaStoreClient.java:199)
at org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient.<init>(SessionHiveMetaStoreClient.java:74)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1521)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.<init>(RetryingMetaStoreClient.java:86)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:132)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:104)
at org.apache.hadoop.hive.ql.metadata.Hive.createMetaStoreClient(Hive.java:3005)
at org.apache.hadoop.hive.ql.metadata.Hive.getMSC(Hive.java:3024)
at org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:503)
at org.apache.spark.sql.hive.client.ClientWrapper.<init>(ClientWrapper.scala:204)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at org.apache.spark.sql.hive.client.IsolatedClientLoader.createClient(IsolatedClientLoader.scala:249)
at org.apache.spark.sql.hive.HiveContext.metadataHive$lzycompute(HiveContext.scala:327)
at org.apache.spark.sql.hive.HiveContext.metadataHive(HiveContext.scala:237)
at org.apache.spark.sql.hive.HiveContext.setConf(HiveContext.scala:441)
at org.apache.spark.sql.hive.HiveContext.defaultOverrides(HiveContext.scala:226)
at org.apache.spark.sql.hive.HiveContext.<init>(HiveContext.scala:229)
at org.apache.spark.sql.hive.HiveContext.<init>(HiveContext.scala:101)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at org.apache.spark.repl.SparkILoop.createSQLContext(SparkILoop.scala:1028)
at $line4.$read$$iwC$$iwC.<init>(<console>:15)
at $line4.$read$$iwC.<init>(<console>:24)
at $line4.$read.<init>(<console>:26)
at $line4.$read$.<init>(<console>:30)
at $line4.$read$.<clinit>(<console>)
at $line4.$eval$.<init>(<console>:7)
at $line4.$eval$.<clinit>(<console>)
at $line4.$eval.$print(<console>)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.spark.repl.SparkIMain$ReadEvalPrint.call(SparkIMain.scala:1065)
at org.apache.spark.repl.SparkIMain$Request.loadAndRun(SparkIMain.scala:1346)
at org.apache.spark.repl.SparkIMain.loadAndRunReq$1(SparkIMain.scala:840)
at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:871)
at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:819)
at org.apache.spark.repl.SparkILoop.reallyInterpret$1(SparkILoop.scala:857)
at org.apache.spark.repl.SparkILoop.interpretStartingWith(SparkILoop.scala:902)
at org.apache.spark.repl.SparkILoop.command(SparkILoop.scala:814)
at org.apache.spark.repl.SparkILoopInit$$anonfun$initializeSpark$1.apply(SparkILoopInit.scala:132)
at org.apache.spark.repl.SparkILoopInit$$anonfun$initializeSpark$1.apply(SparkILoopInit.scala:124)
at org.apache.spark.repl.SparkIMain.beQuietDuring(SparkIMain.scala:324)
at org.apache.spark.repl.SparkILoopInit$class.initializeSpark(SparkILoopInit.scala:124)
at org.apache.spark.repl.SparkILoop.initializeSpark(SparkILoop.scala:64)
at org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1$$anonfun$apply$mcZ$sp$5.apply$mcV$sp(SparkILoop.scala:974)
at org.apache.spark.repl.SparkILoopInit$class.runThunks(SparkILoopInit.scala:159)
at org.apache.spark.repl.SparkILoop.runThunks(SparkILoop.scala:64)
at org.apache.spark.repl.SparkILoopInit$class.postInitialization(SparkILoopInit.scala:108)
at org.apache.spark.repl.SparkILoop.postInitialization(SparkILoop.scala:64)
at org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply$mcZ$sp(SparkILoop.scala:991)
at org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply(SparkILoop.scala:945)
at org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply(SparkILoop.scala:945)
at scala.tools.nsc.util.ScalaClassLoader$.savingContextLoader(ScalaClassLoader.scala:135)
at org.apache.spark.repl.SparkILoop.org$apache$spark$repl$SparkILoop$$process(SparkILoop.scala:945)
at org.apache.spark.repl.SparkILoop.process(SparkILoop.scala:1059)
at org.apache.spark.repl.Main$.main(Main.scala:31)
at org.apache.spark.repl.Main.main(Main.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.spark.deploy.SparkSubmit$.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:731)
at org.apache.spark.deploy.SparkSubmit$.doRunMain$1(SparkSubmit.scala:181)
at org.apache.spark.deploy.SparkSubmit$.submit(SparkSubmit.scala:206)
at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:121)
at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
NestedThrowablesStackTrace:
java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at org.datanucleus.plugin.NonManagedPluginRegistry.createExecutableExtension(NonManagedPluginRegistry.java:631)
at org.datanucleus.plugin.PluginManager.createExecutableExtension(PluginManager.java:325)
at org.datanucleus.store.AbstractStoreManager.registerConnectionFactory(AbstractStoreManager.java:282)
at org.datanucleus.store.AbstractStoreManager.<init>(AbstractStoreManager.java:240)
at org.datanucleus.store.rdbms.RDBMSStoreManager.<init>(RDBMSStoreManager.java:286)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at org.datanucleus.plugin.NonManagedPluginRegistry.createExecutableExtension(NonManagedPluginRegistry.java:631)
at org.datanucleus.plugin.PluginManager.createExecutableExtension(PluginManager.java:301)
at org.datanucleus.NucleusContext.createStoreManagerForProperties(NucleusContext.java:1187)
at org.datanucleus.NucleusContext.initialise(NucleusContext.java:356)
at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.freezeConfiguration(JDOPersistenceManagerFactory.java:775)
at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.createPersistenceManagerFactory(JDOPersistenceManagerFactory.java:333)
at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.getPersistenceManagerFactory(JDOPersistenceManagerFactory.java:202)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at javax.jdo.JDOHelper$16.run(JDOHelper.java:1965)
at java.security.AccessController.doPrivileged(Native Method)
at javax.jdo.JDOHelper.invoke(JDOHelper.java:1960)
at javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1166)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:808)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:701)
at org.apache.hadoop.hive.metastore.ObjectStore.getPMF(ObjectStore.java:365)
at org.apache.hadoop.hive.metastore.ObjectStore.getPersistenceManager(ObjectStore.java:394)
at org.apache.hadoop.hive.metastore.ObjectStore.initialize(ObjectStore.java:291)
at org.apache.hadoop.hive.metastore.ObjectStore.setConf(ObjectStore.java:258)
at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:73)
at org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133)
at org.apache.hadoop.hive.metastore.RawStoreProxy.<init>(RawStoreProxy.java:57)
at org.apache.hadoop.hive.metastore.RawStoreProxy.getProxy(RawStoreProxy.java:66)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.newRawStore(HiveMetaStore.java:593)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.getMS(HiveMetaStore.java:571)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.createDefaultDB(HiveMetaStore.java:620)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.init(HiveMetaStore.java:461)
at org.apache.hadoop.hive.metastore.RetryingHMSHandler.<init>(RetryingHMSHandler.java:66)
at org.apache.hadoop.hive.metastore.RetryingHMSHandler.getProxy(RetryingHMSHandler.java:72)
at org.apache.hadoop.hive.metastore.HiveMetaStore.newRetryingHMSHandler(HiveMetaStore.java:5762)
at org.apache.hadoop.hive.metastore.HiveMetaStoreClient.<init>(HiveMetaStoreClient.java:199)
at org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient.<init>(SessionHiveMetaStoreClient.java:74)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1521)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.<init>(RetryingMetaStoreClient.java:86)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:132)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:104)
at org.apache.hadoop.hive.ql.metadata.Hive.createMetaStoreClient(Hive.java:3005)
at org.apache.hadoop.hive.ql.metadata.Hive.getMSC(Hive.java:3024)
at org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:503)
at org.apache.spark.sql.hive.client.ClientWrapper.<init>(ClientWrapper.scala:204)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at org.apache.spark.sql.hive.client.IsolatedClientLoader.createClient(IsolatedClientLoader.scala:249)
at org.apache.spark.sql.hive.HiveContext.metadataHive$lzycompute(HiveContext.scala:327)
at org.apache.spark.sql.hive.HiveContext.metadataHive(HiveContext.scala:237)
at org.apache.spark.sql.hive.HiveContext.setConf(HiveContext.scala:441)
at org.apache.spark.sql.hive.HiveContext.defaultOverrides(HiveContext.scala:226)
at org.apache.spark.sql.hive.HiveContext.<init>(HiveContext.scala:229)
at org.apache.spark.sql.hive.HiveContext.<init>(HiveContext.scala:101)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at org.apache.spark.repl.SparkILoop.createSQLContext(SparkILoop.scala:1028)
at $line4.$read$$iwC$$iwC.<init>(<console>:15)
at $line4.$read$$iwC.<init>(<console>:24)
at $line4.$read.<init>(<console>:26)
at $line4.$read$.<init>(<console>:30)
at $line4.$read$.<clinit>(<console>)
at $line4.$eval$.<init>(<console>:7)
at $line4.$eval$.<clinit>(<console>)
at $line4.$eval.$print(<console>)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.spark.repl.SparkIMain$ReadEvalPrint.call(SparkIMain.scala:1065)
at org.apache.spark.repl.SparkIMain$Request.loadAndRun(SparkIMain.scala:1346)
at org.apache.spark.repl.SparkIMain.loadAndRunReq$1(SparkIMain.scala:840)
at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:871)
at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:819)
at org.apache.spark.repl.SparkILoop.reallyInterpret$1(SparkILoop.scala:857)
at org.apache.spark.repl.SparkILoop.interpretStartingWith(SparkILoop.scala:902)
at org.apache.spark.repl.SparkILoop.command(SparkILoop.scala:814)
at org.apache.spark.repl.SparkILoopInit$$anonfun$initializeSpark$1.apply(SparkILoopInit.scala:132)
at org.apache.spark.repl.SparkILoopInit$$anonfun$initializeSpark$1.apply(SparkILoopInit.scala:124)
at org.apache.spark.repl.SparkIMain.beQuietDuring(SparkIMain.scala:324)
at org.apache.spark.repl.SparkILoopInit$class.initializeSpark(SparkILoopInit.scala:124)
at org.apache.spark.repl.SparkILoop.initializeSpark(SparkILoop.scala:64)
at org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1$$anonfun$apply$mcZ$sp$5.apply$mcV$sp(SparkILoop.scala:974)
at org.apache.spark.repl.SparkILoopInit$class.runThunks(SparkILoopInit.scala:159)
at org.apache.spark.repl.SparkILoop.runThunks(SparkILoop.scala:64)
at org.apache.spark.repl.SparkILoopInit$class.postInitialization(SparkILoopInit.scala:108)
at org.apache.spark.repl.SparkILoop.postInitialization(SparkILoop.scala:64)
at org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply$mcZ$sp(SparkILoop.scala:991)
at org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply(SparkILoop.scala:945)
at org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply(SparkILoop.scala:945)
at scala.tools.nsc.util.ScalaClassLoader$.savingContextLoader(ScalaClassLoader.scala:135)
at org.apache.spark.repl.SparkILoop.org$apache$spark$repl$SparkILoop$$process(SparkILoop.scala:945)
at org.apache.spark.repl.SparkILoop.process(SparkILoop.scala:1059)
at org.apache.spark.repl.Main$.main(Main.scala:31)
at org.apache.spark.repl.Main.main(Main.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.spark.deploy.SparkSubmit$.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:731)
at org.apache.spark.deploy.SparkSubmit$.doRunMain$1(SparkSubmit.scala:181)
at org.apache.spark.deploy.SparkSubmit$.submit(SparkSubmit.scala:206)
at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:121)
at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
Caused by: org.datanucleus.exceptions.NucleusException: Attempt to invoke the "DBCP" plugin to create a ConnectionPool gave an error : The specified datastore driver ("com.mysql.jdbc.Driver") was not found in the CLASSPATH. Please check your CLASSPATH specification, and the name of the driver.
at org.datanucleus.store.rdbms.ConnectionFactoryImpl.generateDataSources(ConnectionFactoryImpl.java:259)
at org.datanucleus.store.rdbms.ConnectionFactoryImpl.initialiseDataSources(ConnectionFactoryImpl.java:131)
at org.datanucleus.store.rdbms.ConnectionFactoryImpl.<init>(ConnectionFactoryImpl.java:85)
... 122 more
Caused by: org.datanucleus.store.rdbms.connectionpool.DatastoreDriverNotFoundException: The specified datastore driver ("com.mysql.jdbc.Driver") was not found in the CLASSPATH. Please check your CLASSPATH specification, and the name of the driver.
at org.datanucleus.store.rdbms.connectionpool.AbstractConnectionPoolFactory.loadDriver(AbstractConnectionPoolFactory.java:58)
at org.datanucleus.store.rdbms.connectionpool.DBCPConnectionPoolFactory.createConnectionPool(DBCPConnectionPoolFactory.java:50)
at org.datanucleus.store.rdbms.ConnectionFactoryImpl.generateDataSources(ConnectionFactoryImpl.java:238)
... 124 more
16/05/15 19:17:19 INFO HiveMetaStore: 0: Opening raw store with implemenation class:org.apache.hadoop.hive.metastore.ObjectStore
16/05/15 19:17:19 INFO ObjectStore: ObjectStore, initialize called
16/05/15 19:17:19 WARN General: Plugin (Bundle) "org.datanucleus.store.rdbms" is already registered. Ensure you dont have multiple JAR versions of the same plugin in the classpath. The URL "file:/home/raini/spark/lib/datanucleus-rdbms-3.2.9.jar" is already registered, and you are trying to register an identical plugin located at URL "file:/home/raini/app/spark-1.6.1-bin-hadoop2.6/lib/datanucleus-rdbms-3.2.9.jar."
16/05/15 19:17:19 WARN General: Plugin (Bundle) "org.datanucleus" is already registered. Ensure you dont have multiple JAR versions of the same plugin in the classpath. The URL "file:/home/raini/spark/lib/datanucleus-core-3.2.10.jar" is already registered, and you are trying to register an identical plugin located at URL "file:/home/raini/app/spark-1.6.1-bin-hadoop2.6/lib/datanucleus-core-3.2.10.jar."
16/05/15 19:17:19 WARN General: Plugin (Bundle) "org.datanucleus.api.jdo" is already registered. Ensure you dont have multiple JAR versions of the same plugin in the classpath. The URL "file:/home/raini/app/spark-1.6.1-bin-hadoop2.6/lib/datanucleus-api-jdo-3.2.6.jar" is already registered, and you are trying to register an identical plugin located at URL "file:/home/raini/spark/lib/datanucleus-api-jdo-3.2.6.jar."
16/05/15 19:17:19 INFO Persistence: Property datanucleus.cache.level2 unknown - will be ignored
16/05/15 19:17:19 INFO Persistence: Property hive.metastore.integral.jdo.pushdown unknown - will be ignored
16/05/15 19:17:19 WARN Connection: BoneCP specified but not present in CLASSPATH (or one of dependencies)
java.lang.RuntimeException: java.lang.RuntimeException: Unable to instantiate org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient
at org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:522)
at org.apache.spark.sql.hive.client.ClientWrapper.<init>(ClientWrapper.scala:204)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at org.apache.spark.sql.hive.client.IsolatedClientLoader.createClient(IsolatedClientLoader.scala:249)
at org.apache.spark.sql.hive.HiveContext.metadataHive$lzycompute(HiveContext.scala:327)
at org.apache.spark.sql.hive.HiveContext.metadataHive(HiveContext.scala:237)
at org.apache.spark.sql.hive.HiveContext.setConf(HiveContext.scala:441)
at org.apache.spark.sql.hive.HiveContext.defaultOverrides(HiveContext.scala:226)
at org.apache.spark.sql.hive.HiveContext.<init>(HiveContext.scala:229)
at org.apache.spark.sql.hive.HiveContext.<init>(HiveContext.scala:101)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at org.apache.spark.repl.SparkILoop.createSQLContext(SparkILoop.scala:1028)
at $iwC$$iwC.<init>(<console>:15)
at $iwC.<init>(<console>:24)
at <init>(<console>:26)
at .<init>(<console>:30)
at .<clinit>(<console>)
at .<init>(<console>:7)
at .<clinit>(<console>)
at $print(<console>)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.spark.repl.SparkIMain$ReadEvalPrint.call(SparkIMain.scala:1065)
at org.apache.spark.repl.SparkIMain$Request.loadAndRun(SparkIMain.scala:1346)
at org.apache.spark.repl.SparkIMain.loadAndRunReq$1(SparkIMain.scala:840)
at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:871)
at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:819)
at org.apache.spark.repl.SparkILoop.reallyInterpret$1(SparkILoop.scala:857)
at org.apache.spark.repl.SparkILoop.interpretStartingWith(SparkILoop.scala:902)
at org.apache.spark.repl.SparkILoop.command(SparkILoop.scala:814)
at org.apache.spark.repl.SparkILoopInit$$anonfun$initializeSpark$1.apply(SparkILoopInit.scala:132)
at org.apache.spark.repl.SparkILoopInit$$anonfun$initializeSpark$1.apply(SparkILoopInit.scala:124)
at org.apache.spark.repl.SparkIMain.beQuietDuring(SparkIMain.scala:324)
at org.apache.spark.repl.SparkILoopInit$class.initializeSpark(SparkILoopInit.scala:124)
at org.apache.spark.repl.SparkILoop.initializeSpark(SparkILoop.scala:64)
at org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1$$anonfun$apply$mcZ$sp$5.apply$mcV$sp(SparkILoop.scala:974)
at org.apache.spark.repl.SparkILoopInit$class.runThunks(SparkILoopInit.scala:159)
at org.apache.spark.repl.SparkILoop.runThunks(SparkILoop.scala:64)
at org.apache.spark.repl.SparkILoopInit$class.postInitialization(SparkILoopInit.scala:108)
at org.apache.spark.repl.SparkILoop.postInitialization(SparkILoop.scala:64)
at org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply$mcZ$sp(SparkILoop.scala:991)
at org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply(SparkILoop.scala:945)
at org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply(SparkILoop.scala:945)
at scala.tools.nsc.util.ScalaClassLoader$.savingContextLoader(ScalaClassLoader.scala:135)
at org.apache.spark.repl.SparkILoop.org$apache$spark$repl$SparkILoop$$process(SparkILoop.scala:945)
at org.apache.spark.repl.SparkILoop.process(SparkILoop.scala:1059)
at org.apache.spark.repl.Main$.main(Main.scala:31)
at org.apache.spark.repl.Main.main(Main.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.spark.deploy.SparkSubmit$.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:731)
at org.apache.spark.deploy.SparkSubmit$.doRunMain$1(SparkSubmit.scala:181)
at org.apache.spark.deploy.SparkSubmit$.submit(SparkSubmit.scala:206)
at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:121)
at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
Caused by: java.lang.RuntimeException: Unable to instantiate org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient
at org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1523)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.<init>(RetryingMetaStoreClient.java:86)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:132)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:104)
at org.apache.hadoop.hive.ql.metadata.Hive.createMetaStoreClient(Hive.java:3005)
at org.apache.hadoop.hive.ql.metadata.Hive.getMSC(Hive.java:3024)
at org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:503)
... 64 more
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1521)
... 70 more
Caused by: javax.jdo.JDOFatalInternalException: Error creating transactional connection factory
NestedThrowables:
java.lang.reflect.InvocationTargetException
at org.datanucleus.api.jdo.NucleusJDOHelper.getJDOExceptionForNucleusException(NucleusJDOHelper.java:587)
at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.freezeConfiguration(JDOPersistenceManagerFactory.java:788)
at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.createPersistenceManagerFactory(JDOPersistenceManagerFactory.java:333)
at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.getPersistenceManagerFactory(JDOPersistenceManagerFactory.java:202)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at javax.jdo.JDOHelper$16.run(JDOHelper.java:1965)
at java.security.AccessController.doPrivileged(Native Method)
at javax.jdo.JDOHelper.invoke(JDOHelper.java:1960)
at javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1166)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:808)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:701)
at org.apache.hadoop.hive.metastore.ObjectStore.getPMF(ObjectStore.java:365)
at org.apache.hadoop.hive.metastore.ObjectStore.getPersistenceManager(ObjectStore.java:394)
at org.apache.hadoop.hive.metastore.ObjectStore.initialize(ObjectStore.java:291)
at org.apache.hadoop.hive.metastore.ObjectStore.setConf(ObjectStore.java:258)
at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:73)
at org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133)
at org.apache.hadoop.hive.metastore.RawStoreProxy.<init>(RawStoreProxy.java:57)
at org.apache.hadoop.hive.metastore.RawStoreProxy.getProxy(RawStoreProxy.java:66)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.newRawStore(HiveMetaStore.java:593)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.getMS(HiveMetaStore.java:571)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.createDefaultDB(HiveMetaStore.java:624)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.init(HiveMetaStore.java:461)
at org.apache.hadoop.hive.metastore.RetryingHMSHandler.<init>(RetryingHMSHandler.java:66)
at org.apache.hadoop.hive.metastore.RetryingHMSHandler.getProxy(RetryingHMSHandler.java:72)
at org.apache.hadoop.hive.metastore.HiveMetaStore.newRetryingHMSHandler(HiveMetaStore.java:5762)
at org.apache.hadoop.hive.metastore.HiveMetaStoreClient.<init>(HiveMetaStoreClient.java:199)
at org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient.<init>(SessionHiveMetaStoreClient.java:74)
... 75 more
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at org.datanucleus.plugin.NonManagedPluginRegistry.createExecutableExtension(NonManagedPluginRegistry.java:631)
at org.datanucleus.plugin.PluginManager.createExecutableExtension(PluginManager.java:325)
at org.datanucleus.store.AbstractStoreManager.registerConnectionFactory(AbstractStoreManager.java:282)
at org.datanucleus.store.AbstractStoreManager.<init>(AbstractStoreManager.java:240)
at org.datanucleus.store.rdbms.RDBMSStoreManager.<init>(RDBMSStoreManager.java:286)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at org.datanucleus.plugin.NonManagedPluginRegistry.createExecutableExtension(NonManagedPluginRegistry.java:631)
at org.datanucleus.plugin.PluginManager.createExecutableExtension(PluginManager.java:301)
at org.datanucleus.NucleusContext.createStoreManagerForProperties(NucleusContext.java:1187)
at org.datanucleus.NucleusContext.initialise(NucleusContext.java:356)
at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.freezeConfiguration(JDOPersistenceManagerFactory.java:775)
... 104 more
Caused by: org.datanucleus.exceptions.NucleusException: Attempt to invoke the "DBCP" plugin to create a ConnectionPool gave an error : The specified datastore driver ("com.mysql.jdbc.Driver") was not found in the CLASSPATH. Please check your CLASSPATH specification, and the name of the driver.
at org.datanucleus.store.rdbms.ConnectionFactoryImpl.generateDataSources(ConnectionFactoryImpl.java:259)
at org.datanucleus.store.rdbms.ConnectionFactoryImpl.initialiseDataSources(ConnectionFactoryImpl.java:131)
at org.datanucleus.store.rdbms.ConnectionFactoryImpl.<init>(ConnectionFactoryImpl.java:85)
... 122 more
Caused by: org.datanucleus.store.rdbms.connectionpool.DatastoreDriverNotFoundException: The specified datastore driver ("com.mysql.jdbc.Driver") was not found in the CLASSPATH. Please check your CLASSPATH specification, and the name of the driver.
at org.datanucleus.store.rdbms.connectionpool.AbstractConnectionPoolFactory.loadDriver(AbstractConnectionPoolFactory.java:58)
at org.datanucleus.store.rdbms.connectionpool.DBCPConnectionPoolFactory.createConnectionPool(DBCPConnectionPoolFactory.java:50)
at org.datanucleus.store.rdbms.ConnectionFactoryImpl.generateDataSources(ConnectionFactoryImpl.java:238)
... 124 more

<console>:16: error: not found: value sqlContext
         import sqlContext.implicits._
                ^
<console>:16: error: not found: value sqlContext
         import sqlContext.sql

                ^

仔细观察日志开始以为是Hive的配置文件问题，可是Hive使用正常，又检查的mysql(元数据库)也是正常的，结果是mysql驱动没有被读取，启动spark时指定驱动可以正常启动。

raini@biyuzhe:~$ spark-shell --jars /home/raini/spark/lib/mysql-connector-java-5.1.38-bin.jar   可是我的hive/spark目录都是有的