bioperl安装

Comand-line Installation

Use the ActiveState ppm-shell:

• Open a cmd window by going to Start >> Run and typing 'cmd' and pressing return.

• Do

C:> ppm-shellppm>

• Make sure you have the module PPM-Repositories. Try installing it:

ppm> install PPM-Repositories

• For BioPerl 1.6.1, we require at least the following repositories. You may have some present already.

ppm> repo add http://bioperl.org/DISTppm> repo add uwinnipegppm> repo add trouchelle

Because you have installed PPM-Repositories, PPM will know your Perl version, and select the correct repo from the table above.

• Install BioPerl (not "bioperl").

ppm> install BioPerl

If you are running ActiveState Perl 5.10, you may have a glitch involving SOAP::Lite. Use the following workaround:

• Get the index numbers for your active repositories:

ppm> repo│ id │ pkgs  │ name                           ││  1 │ 11431 │ ActiveState Package Repository ││  2 │    14 │ bioperl.org                    ││  3 │   291 │ uwinnipeg                      ││  4 │ 11755 │ trouchelle                     │

• Execute the following commands. (The session here is based on the above table. Substitute the correct index numbers for your situation.)

rem -turn off ActiveState, trouchelle reposppm> repo off 1ppm> repo off 4rem -to get SOAP-Lite-0.69 from uwinnipeg...ppm> install SOAP-Literem -turn ActiveState, trouchelle back on...ppm> repo on 1ppm> repo on 4rem -now try...ppm> install BioPerl