MATLAB Toolbox 大全

找几个不错的Matlab资源。里面有不少需要的模型、方法，比如multifractal，貌似还有kriging，Kalman滤波。好东西不少，有时间得多看看。字数限制，只能分三次篇了。

转自：

http://www.baisi.net/thread-51930-1-3.html

http://blog.hjenglish.com/rainy8758/articles/1337926.html

http://zjm040186.blog.163.com/blog/static/3024899020087273225176/

 

MATLAB Toolboxes

 

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• ADCPtools - acoustic doppler current profiler data processing
• AFDesign - designing analog and digital filters
• AIRES - automatic integration of reusable embedded software
• Air-Sea - air-sea flux estimates in oceanography
• Animation - developing scientific animations
• ARfit - estimation of parameters and eigenmodes of multivariate autoregressive methods
• ARMASA - power spectrum estimation
• AR-Toolkit - computer vision tracking
• Auditory - auditory models
• b4m - interval arithmetic
• Bayes Net - inference and learning for directed graphical models
• Binaural Modeling - calculating binaural cross-correlograms of sound
• Bode Step - design of control systems with maximized feedback
• Bootstrap - for resampling, hypothesis testing and confidence interval estimation
• BrainStorm - MEG and EEG data visualization and processing
• BSTEX - equation viewer
• CALFEM - interactive program for teaching the finite element method
• Calibr - for calibrating CCD cameras
• Camera Calibration
• Captain - non-stationary time series analysis and forecasting
• CHMMBOX - for coupled hidden Markov modeling using maximum likelihood EM
• Classification - supervised and unsupervised classification algorithms
• CLOSID
• Cluster - for analysis of Gaussian mixture models for data set clustering
• Clustering - cluster analysis
• ClusterPack - cluster analysis
• COLEA - speech analysis
• CompEcon - solving problems in economics and finance
• Complex - for estimating temporal and spatial signal complexities
• Computational Statistics
• Coral - seismic waveform analysis
• DACE - kriging approximations to computer models
• DAIHM - data assimilation in hydrological and hydrodynamic models
• Data Visualization
• DBT - radar array processing
• DDE-BIFTOOL - bifurcation analysis of delay differential equations
• Denoise - for removing noise from signals
• DiffMan - solving differential equations on manifolds
• Dimensional Analysis -
• DIPimage - scientific image processing
• Direct - Laplace transform inversion via the direct integration method
• DirectSD - analysis and design of computer controlled systems with process-oriented models
• DMsuite - differentiation matrix suite
• DMTTEQ - design and test time domain equalizer design methods
• DrawFilt - drawing digital and analog filters
• DSFWAV - spline interpolation with Dean wave solutions
• DWT - discrete wavelet transforms
• EasyKrig
• Econometrics
• EEGLAB
• EigTool - graphical tool for nonsymmetric eigenproblems
• EMSC - separating light scattering and absorbance by extended multiplicative signal correction
• Engineering Vibration
• FastICA - fixed-point algorithm for ICA and projection pursuit
• FDC - flight dynamics and control
• FDtools - fractional delay filter design
• FlexICA - for independent components analysis
• FMBPC - fuzzy model-based predictive control
• ForWaRD - Fourier-wavelet regularized deconvolution
• FracLab - fractal analysis for signal processing
• FSBOX - stepwise forward and backward selection of features using linear regression
• GABLE - geometric algebra tutorial
• GAOT - genetic algorithm optimization
• Garch - estimating and diagnosing heteroskedasticity in time series models
• GCE Data - managing, analyzing and displaying data and metadata stored using the GCE data structure specification
• GCSV - growing cell structure visualization
• GEMANOVA - fitting multilinear ANOVA models
• Genetic Algorithm
• Geodetic - geodetic calculations
• GHSOM - growing hierarchical self-organizing map
• glmlab - general linear models
• GPIB - wrapper for GPIB library from National Instrument
• GTM - generative topographic mapping, a model for density modeling and data visualization
• GVF - gradient vector flow for finding 3-D object boundaries
• HFRadarmap - converts HF radar data from radial current vectors to total vectors
• HFRC - importing, processing and manipulating HF radar data
• Hilbert - Hilbert transform by the rational eigenfunction expansion method
• HMM - hidden Markov models
• HMMBOX - for hidden Markov modeling using maximum likelihood EM
• HUTear - auditory modeling
• ICALAB - signal and image processing using ICA and higher order statistics

• Imputation - analysis of incomplete datasets
• IPEM - perception based musical analysis
• JMatLink - Matlab Java classes

• Kalman - Bayesian Kalman filter
• Kalman Filter - filtering, smoothing and parameter estimation (using EM) for linear dynamical systems
• KALMTOOL - state estimation of nonlinear systems
• Kautz - Kautz filter design
• Kriging
• LDestimate - estimation of scaling exponents
• LDPC - low density parity check codes
• LISQ - wavelet lifting scheme on quincunx grids
• LKER - Laguerre kernel estimation tool
• LMAM-OLMAM - Levenberg Marquardt with Adaptive Momentum algorithm for training feedforward neural networks
• Low-Field NMR - for exponential fitting, phase correction of quadrature data and slicing
• LPSVM - Newton method for LP support vector machine for machine learning problems
• LSDPTOOL - robust control system design using the loop shaping design procedure
• LS-SVMlab
• LSVM - Lagrangian support vector machine for machine learning problems
• Lyngby - functional neuroimaging
• MARBOX - for multivariate autogressive modeling and cross-spectral estimation
• MatArray - analysis of microarray data
• Matrix Computation - constructing test matrices, computing matrix factorizations, visualizing matrices, and direct search optimization
• MCAT - Monte Carlo analysis
• MDP - Markov decision processes
• MESHPART - graph and mesh partioning methods
• MILES - maximum likelihood fitting using ordinary least squares algorithms
• MIMO - multidimensional code synthesis
• Missing - functions for handling missing data values
• M_Map - geographic mapping tools
• MODCONS - multi-objective control system design
• MOEA - multi-objective evolutionary algorithms
• MS - estimation of multiscaling exponents
• Multiblock - analysis and regression on several data blocks simultaneously
• Multiscale Shape Analysis
• Music Analysis - feature extraction from raw audio signals for content-based music retri
• MWM - multifractal wavelet model
• NetCDF
• Netlab - neural network algorithms
• NiDAQ - data acquisition using the NiDAQ library
• NEDM - nonlinear economic dynamic models
• NMM - numerical methods in Matlab text
• NNCTRL - design and simulation of control systems based on neural networks
• NNSYSID - neural net based identification of nonlinear dynamic systems
• NSVM - newton support vector machine for solving machine learning problems
• NURBS - non-uniform rational B-splines
• N-way - analysis of multiway data with multilinear models
• OpenFEM - finite element development
• PCNN - pulse coupled neural networks
• Peruna - signal processing and analysis
• PhiVis - probabilistic hierarchical interactive visualization, i.e. functions for visual analysis of multivariate continuous data
• Planar Manipulator - simulation of n-DOF planar manipulators
• PRTools - pattern recognition
• psignifit - testing hyptheses about psychometric functions
• PSVM - proximal support vector machine for solving machine learning problems
• Psychophysics - vision research
• PyrTools - multi-scale image processing
• RBF - radial basis function neural networks
• RBN - simulation of synchronous and asynchronous random boolean networks
• ReBEL - sigma-point Kalman filters
• Regression - basic multivariate data analysis and regression
• Regularization Tools
• Regularization Tools XP
• Restore Tools
• Robot - robotics functions, e.g. kinematics, dynamics and trajectory generation
• Robust Calibration - robust calibration in stats
• RRMT - rainfall-runoff modelling
• SAM - structure and motion
• Schwarz-Christoffel - computation of conformal maps to polygonally bounded regions
• SDH - smoothed data histogram
• SeaGrid - orthogonal grid maker
• SEA-MAT - oceanographic analysis
• SLS - sparse least squares
• SolvOpt - solver for local optimization problems
• SOM - self-organizing map
• SOSTOOLS - solving sums of squares (SOS) optimization problems
• Spatial and Geometric Analysis
• Spatial Regression
• Spatial Statistics
• Spectral Methods
• SPM - statistical parametric mapping
• SSVM - smooth support vector machine for solving machine learning problems
• STATBAG - for linear regression, feature selection, generation of data, and significance testing
• StatBox - statistical routines
• Statistical Pattern Recognition - pattern recognition methods
• Stixbox - statistics
• SVM - implements support vector machines
• SVM Classifier
• Symbolic Robot Dynamics
• TEMPLAR - wavelet-based template learning and pattern classification
• TextClust - model-based document clustering
• TextureSynth - analyzing and synthesizing visual textures
• TfMin - continous 3-D minimum time orbit transfer around Earth
• Time-Frequency - analyzing non-stationary signals using time-frequency distributions
• Tree-Ring - tasks in tree-ring analysis
• TSA - uni- and multivariate, stationary and non-stationary time series analysis
• TSTOOL - nonlinear time series analysis
• T_Tide - harmonic analysis of tides
• UTVtools - computing and modifying rank-revealing URV and UTV decompositions
• Uvi_Wave - wavelet analysis
• varimax - orthogonal rotation of EOFs
• VBHMM - variation Bayesian hidden Markov models
• VBMFA - variational Bayesian mixtures of factor analyzers
• VMT - VRML Molecule Toolbox, for animating results from molecular dynamics experiments
• VOICEBOX
• VRMLplot - generates interactive VRML 2.0 graphs and animations
• VSVtools - computing and modifying symmetric rank-revealing decompositions
• WAFO - wave analysis for fatique and oceanography
• WarpTB - frequency-warped signal processing
• WAVEKIT - wavelet analysis
• WaveLab - wavelet analysis
• Weeks - Laplace transform inversion via the Weeks method
• WetCDF - NetCDF interface
• WHMT - wavelet-domain hidden Markov tree models
• WInHD - Wavelet-based inverse halftoning via deconvolution
• WSCT - weighted sequences clustering toolkit
• XMLTree - XML parser
• YAADA - analyze single particle mass spectrum data
• ZMAP - quantitative seismicity analysis
• ZSM (zero sum multinomial)

http://mcgillb.user.msu.edu/zsmcode.html

Binaural-modeling software for MATLAB/Windows
http://www.lifesci.sussex.ac.uk/home/Michael_Akeroyd/download2.html

Statistical Parametric Mapping (SPM)
http://www.fil.ion.ucl.ac.uk/spm/ext/

BOOTSTRAP MATLAB TOOLBOX
http://www.csp.curtin.edu.au/downloads/bootstrap_toolbox.html

The DSS package for MATLAB
DSS Matlab package contains algorithms for performing linear, deflation and symmetric DSS.
http://www.cis.hut.fi/projects/dss/package/

Psychtoolbox
http://www.psychtoolbox.org/download.html

Multisurface Method Tree with MATLAB
http://www.cs.wisc.edu/~olvi/uwmp/msmt.html

A Matlab Toolbox for every single topic !
http://stommel.tamu.edu/~baum/toolboxes.html
eg. BrainStorm - MEG and EEG data visualization and processing

CLAWPACK is a software package designed to compute numerical solutions to hyperbolic partial differential equations using a wave propagation approach
http://www.amath.washington.edu/~claw/

DIPimage - Image Processing Toolbox

PRTools - Pattern Recognition Toolbox (+ Neural Networks)

NetLab - Neural Network Toolbox

FSTB - Fuzzy Systems Toolbox

Fusetool - Image Fusion Toolbox
http://www.metapix.de/toolbox.htm

WAVEKIT - Wavelet Toolbox

Gat - Genetic Algorithm Toolbox

TSTOOL is a MATLAB software package for nonlinear time series analysis.
TSTOOL can be used for computing: Time-delay reconstruction, Lyapunov exponents, Fractal dimensions, Mutual information, Surrogate data tests, Nearest neighbor statistics, Return times, Poincare sections, Nonlinear prediction
http://www.physik3.gwdg.de/tstool/

MATLAB / Data description toolbox
A Matlab toolbox for data description, outlier and novelty detection
March 26, 2004 - D.M.J. Tax
http://www-ict.ewi.tudelft.nl/~davidt/dd_tools/dd_manual.html

MBE
http://www.pmarneffei.hku.hk/mbetoolbox/

Betabolic network toolbox for Matlab
http://www.molgen.mpg.de/~lieberme/pages/network_matlab.html

Pharmacokinetics toolbox for Matlab
http://page.inf.fu-berlin.de/~lieber/seiten/pbpk_toolbox.html

The Spider
The spider is intended to be a complete object orientated environment for machine learning in Matlab. Aside from easy use of base learning algorithms, algorithms can be plugged together and can be compared with, e.g model selection, statistical tests and visual plots. This gives all the power of objects (reusability, plug together, share code) but also all the power of Matlab for machine learning research.
http://www.kyb.tuebingen.mpg.de/bs/people/spider/index.html

Schwarz-Christoffel Toolbox
http://www.mathworks.com/matlabcentral/fileexchange/loadFile.do?objectId=1316&objectType=file#


XML Toolbox
http://www.mathworks.com/matlabcentral/fileexchange/loadFile.do?objectId=4278&objectType=file

FIR/TDNN Toolbox for MATLAB
Beta version of a toolbox for FIR (Finite Impulse Response) and TD (Time Delay) Neural Networks.
http://www.cs.utep.edu/interval-comp/dagstuhl.03/oish.pdf

Misc.

http://www.dcsc.tudelft.nl/Research/Software/index.html

Astronomy

Saturn and Titan trajectories ... MALTAB astronomy
http://sprg.ssl.berkeley.edu/~abrecht/Matlab-codes/

Audio

MA Toolbox for Matlab Implementing Similarity Measures for Audio
http://www.oefai.at/~elias/ma/index.html

MAD - Matlab Auditory Demonstrations
http://www.dcs.shef.ac.uk/~martin/MAD/docs/mad.htm


Music Analysis - Toolbox for Matlab : Feature Extraction from Raw Audio Signals for Content-Based Music Retri
http://www.ai.univie.ac.at/~elias/ma/


WarpTB - Matlab Toolbox for Warped DSP
By Aki Härmä and Matti Karjalainen
http://www.acoustics.hut.fi/software/warp/


MATLAB-related Software
http://www.dpmi.tu-graz.ac.at/~schloegl/matlab/


Biomedical Signal data formats (EEG machine specific file formats with Matlab import routines)
http://www.dpmi.tu-graz.ac.at/~schloegl/matlab/eeg/


MPEG Encoding library for MATLAB Movies (Created by David Foti)
It enables MATLAB users to read (MPGREAD) or write (MPGWRITE) MPEG movies. That should help Video Quality project.


Filter Design package
http://www.ee.ryerson.ca:8080/~mzeytin/dfp/index.html


Octave by Christophe COUVREUR (Generates normalized A-weigthing, C-weighting, octave and one-third-octave digital filters)
http://www.mathworks.com/matlabcentral/fileexchange/loadFile.do?objectType=file&objectId=69


Source Coding MATLAB Toolbox
http://www.ece.umn.edu/users/kieffer/programs.html


Bio Medical Informatics (Top)

CGH-Plotter: MATLAB Toolbox for CGH-data Analysis
Code: http://sigwww.cs.tut.fi/TICSP/CGH-Plotter/
Poster: http://sigwww.cs.tut.fi/TICSP/CSB2003/Posteri_CGH_Plotter.pdf


The Brain Imaging Software Toolbox
http://www.bic.mni.mcgill.ca/software/


MRI Brain Segmentation
http://www.mathworks.com/matlabcentral/fileexchange/loadFile.do?objectId=4879


Chemometrics (providing PCA) (Top)

Matlab Molecular Biology & Evolution Toolbox
(Toolbox Enables Evolutionary Biologists to Analyze and View DNA and Protein Sequences)
James J. Cai
http://www.pmarneffei.hku.hk/mbetoolbox/


Toolbox provided by Prof. Massart research group
http://minf.vub.ac.be/~fabi/publiek/


Useful collection of routines from Prof age smilde research group
http://www-its.chem.uva.nl/research/pac


Multivariate Toolbox written by Rune Mathisen
http://www.bitjungle.com/~mvartools/index.html


Matlab code and datasets
http://www.acc.umu.se/~tnkjtg/chemometrics/dataset.html


Chaos (Top)

Chaotic Systems Toolbox
http://www.mathworks.com/matlabcentral/fileexchange/loadFile.do?objectId=1597&objectType=file#


HOSA Toolbox
http://www.mathworks.nl/matlabcentral/fileexchange/loadFile.do?objectId=3013&objectType=file


Chemistry (Top)

MetMAP - (Metabolical Modeling, Analysis and oPtimization alias Met. M. A. P.)
http://webpages.ull.es/users/sympbst/pag_ing/pag_metmap/index.htm


DoseLab - A set of software programs for quantitative comparison of measured and computed radiation dose distributions
http://doselab.sourceforge.net/


GenBank Overview
http://www.ncbi.nlm.nih.gov/Genbank/GenbankOverview.html
Matlab: http://www.mathworks.com/matlabcentral/fileexchange/loadFile.do?objectId=1139


Coding

Code for the estimation of Scaling Exponents
http://www.cubinlab.ee.mu.oz.au/~darryl/secondorder_code.html


Control (Top)

Control Tutorial for Matlab
http://www.engin.umich.edu/group/ctm/


Another

Communications (Top)

Channel Learning Architecture toolbox
(This Matlab toolbox is a supplement to the article "HiperLearn: A High Performance Learning Architecture")
http://www.isy.liu.se/cvl/Projects/hiperlearn/


Source Coding MATLAB Toolbox
http://www.ece.umn.edu/users/kieffer/programs.html


TCP/UDP/IP Toolbox 2.0.4
http://www.mathworks.com/matlabcentral/fileexchange/loadFile.do?objectId=345&objectType=file


Home Networking Basis: Transmission Environments and Wired/Wireless Protocols
Walter Y. Chen
http://www.mathworks.com/support/books/book5295.jsp?category=new&language=-1

MATLAB M-files and Simulink models
http://www.mathworks.com/matlabcentral/fileexchange/loadFile.do?objectId=3834&objectType=file

• OPNML/MATLAB Facilities
  http://www.opnml.unc.edu/OPNML_Matlab/
  
  Mesh Generation
  http://www.cs.cornell.edu/home/vavasis/qmg-home.html
  
  OpenFEM : An Open-Source Finite Element Toolbox
  http://www.openfem.net/
  
  CALFEM is an interactive computer program for teaching the finite element method (FEM)
  http://www.byggmek.lth.se/Calfem/frinfo.htm
  
  The Engineering Vibration Toolbox
  http://www.cs.wright.edu/people/faculty/jslater/vtoolbox/vtoolbox.html
  
  SaGA - Spatial and Geometric Analysis Toolbox
  by Kirill K. Pankratov
  http://puddle.mit.edu/~glenn/kirill/saga.html
  
  MexCDF and NetCDF Toolbox For Matlab-5&6
  http://woodshole.er.usgs.gov/staffpages/cdenham/public_html/MexCDF/nc4ml5.html
  
  CUEDSID: Cambridge University System Identification Toolbox
  http://www-control.eng.cam.ac.uk/jmm/cuedsid/
  
  Kriging Toolbox
  http://www.ai-geostats.org/software/Geostats_software/MATLAB_KRIGING_TOOLBOX.htm
  
  Monte Carlo (Dr Nando)
  http://www.cs.ubc.ca/~nando/software.html
  
  RIOTS - The Most Powerful Optimal Control Problem Solver
  http://blank.hypersurf.com/~adam/RIOTS/
  
  Excel
  
  MATLAB xlsheets
  http://www.mathworks.com/matlabcentral/fileexchange/loadFile.do?objectId=4474&objectType=file
  
  write2excel
  http://www.mathworks.com/matlabcentral/fileexchange/loadFile.do?objectId=4414&objectType=file
  
  Finite Element Modeling (FEM) (Top)
  
  OpenFEM - An Open-Source Finite Element Toolbox
  http://www.openfem.net/
  
  
  NLFET - nonlinear finite element toolbox for MATLAB ( framework for setting up, solving, and interpreting results for nonlinear static and dynamic finite element analysis.)
  http://nlfet.sourceforge.net/
  
  
  GetFEM - C++ library for finite element methods elementary computations with a Matlab interface
  http://www.gmm.insa-tlse.fr/getfem/
  
  
  FELIPE - FEA package to view results ( contains neat interface to MATLA
  http://www.brunel.ac.uk/~blstmbr/felipe/
  
  
  Finance (Top)
  
  A NEW MATLAB-BASED TOOLBOX FOR COMPUTER AIDED DYNAMIC TECHNICAL TRADING
  Stephanos Papadamou and George Stephanides
  Department of Applied Informatics, University Of Macedonia Economic & Social Sciences, Thessaloniki, Greece
  http://www.fenews.com/fen31/one_time_articles/dynamic_tech_trade_matlab6.htm
  Paper: http://econwpa.wustl.edu:8089/eps/prog/papers/0201/0201001.pdf
  
  
  CompEcon Toolbox for Matlab
  http://www4.ncsu.edu/~pfackler/compecon/toolbox.html
  
  Genetic Algorithms (Top)
  
  The Genetic Algorithm Optimization Toolbox (GAOT) for Matlab 5
  http://www.ie.ncsu.edu/mirage/GAToolBox/gaot/
  
  Genetic Algorithm Toolbox
  Written & distributed by Andy Chipperfield (Sheffield University, UK)
  http://www.shef.ac.uk/uni/projects/gaipp/gatbx.html
  Manual: http://www.shef.ac.uk/~gaipp/ga-toolbox/manual.pdf
  
  
  Genetic and Evolutionary Algorithm Toolbox (GEATbx)
  http://www.geatbx.com/
  
  Evolutionary Algorithms for MATLAB
  http://www.geatbx.com/links/ea_matlab.html
  
  Genetic/Evolutionary Algorithms for MATLAB
  http://www.systemtechnik.tu-ilmenau.de/~pohlheim/EA_Matlab/ea_matlab.html
  
  Graphics
  
  VideoToolbox (C routines for visual psychophysics on Macs by Denis Pelli)
  http://vision.nyu.edu/VideoToolbox/
  Paper: http://psych.nyu.edu/pelli/pubs/pelli1997videotoolbox.pdf
  
  4D toolbox
  http://www.nmr.mgh.harvard.edu/~daniel/links/matlab/4DToolbox.html
  
  Images (Top)
  
  Eyelink Toolbox
  http://psychtoolbox.org/eyelinktoolbox/
  Paper: http://psychtoolbox.org/eyelinktoolbox/EyelinkToolbox.pdf
  
  
  CellStats: Automated statistical analysis of color-stained cell images in Matlab
  http://sigwww.cs.tut.fi/TICSP/CellStats/
  
  SDC Morphology Toolbox for MATLAB (powerful collection of latest state-of-the-art gray-scale morphological tools that can be applied to image segmentation, non-linear filtering, pattern recognition and image analysis)
  http://www.mmorph.com/
  
  Image Acquisition Toolbox
  http://www.mathworks.com/products/imaq/
  
  Halftoning Toolbox for MATLAB
  http://www.ece.utexas.edu/~bevans/projects/halftoning/toolbox/index.html
  
  DIPimage - A Scientific Image Processing Toolbox for MATLAB
  http://www.ph.tn.tudelft.nl/DIPlib/dipimage_1.html
  
  PNM Toolbox
  http://home.online.no/~pjacklam/matlab/software/pnm/index.html
  
  Another
  
  ICA / KICA and KPCA (Top)
  
  ICA TU Toolbox
  http://mole.imm.dtu.dk/toolbox/menu.html
  
  MISEP Linear and Nonlinear ICA Toolbox
  http://neural.inesc-id.pt/~lba/ica/mitoolbox.html
  
  Kernel Independant Component Analysis
  http://www.cs.berkeley.edu/~fbach/kernel-ica/index.htm
  Matlab: kernel-ica version 1.2
  
  KPCA- Please check the software section of kernel machines.
  
  Kernel
  
  Statistical Pattern Recognition Toolbox
  http://cmp.felk.cvut.cz/~xfrancv/stprtool/
  
  
  MATLABArsenal A MATLAB Wrapper for Classification
  http://finalfantasyxi.inf.cs.cmu.edu/tmp/MATLABArsenal.htm
  
  Markov (Top)
  
  MapHMMBOX 1.1 - Matlab toolbox for Hidden Markov Modelling using Max. Aposteriori EM
  Prerequisites: Matlab 5.0, Netlab. Last Updated: 18 March 2002.
  http://www.robots.ox.ac.uk/~parg/software/maphmmbox_1_1.tar
  
  HMMBOX 4.1 - Matlab toolbox for Hidden Markov Modelling using Variational Bayes
  Prerequisites: Matlab 5.0,Netlab. Last Updated: 15 February 2002..
  http://www.robots.ox.ac.uk/~parg/software/hmmbox_3_2.tar
  http://www.robots.ox.ac.uk/~parg/software/hmmbox_4_1.tar
  
  Markov Decision Process (MDP) Toolbox for Matlab
  Kevin Murphy, 1999
  http://www.ai.mit.edu/~murphyk/Software/MDP/MDP.zip
  
  
  Markov Decision Process (MDP) Toolbox v1.0 for MATLAB
  http://www.inra.fr/bia/T/MDPtoolbox/
  
  
  Hidden Markov Model (HMM) Toolbox for Matlab
  http://www.ai.mit.edu/~murphyk/Software/HMM/hmm.html
  
  Bayes Net Toolbox for Matlab
  http://www.ai.mit.edu/~murphyk/Software/BNT/bnt.html
  
  Medical (Top)
  
  EEGLAB Open Source Matlab Toolbox for Physiological Research (formerly ICA/EEG Matlab toolbox)
  http://www.sccn.ucsd.edu/~scott/ica.html
  
  MATLAB Biomedical Signal Processing Toolbox
  http://bsp.pdx.edu/Toolbox/
  
  Powerful package for neurophysiological data analysis ( Igor Kagan webpage)
  http://igoresha.virtualave.net/Matlab/Unitret.html
  
  EEG / MRI Matlab Toolbox
  http://eeg.sourceforge.net/
  
  Microarray data analysis toolbox (MDAT): for normalization, adjustment and analysis of gene expression_r data.
  Knowlton N, Dozmorov IM, Centola M. Department of Arthritis and Immunology, Oklahoma Medical Research Foundation, Oklahoma City, OK, USA 73104. We introduce a novel Matlab toolbox for microarray data analysis. This toolbox uses normalization based upon a normally distributed background and differential gene expression_r based on 5 statistical measures. The objects in this toolbox are open source and can be implemented to suit your application. AVAILABILITY: MDAT v1.0 is a Matlab toolbox and requires Matlab to run. MDAT is freely available at:
  http://microarray.omrf.org/publications/2004/knowlton/MDAT.zip
  
  MIDI (Top)
  
  MIDI Toolbox version 1.0 (GNU General Public License)
  http://www.jyu.fi/musica/miditoolbox/
  
  Misc. (Top)
  
  MATLAB-The Graphing Tool
  http://sprg.ssl.berkeley.edu/~abrecht/matlab.html
  
  3-D Circuits The Circuit Animation Toolbox for MATLAB
  http://engineering.dartmouth.edu/other/3Dcircuits/
  
  SendMail
  http://carol.wins.uva.nl/~portegie/matlab/sendmail/
  
  Coolplot
  http://www.reimeika.ca/marco/matlab/coolplots.html
  
  MPI (Matlab Parallel Interface)
  
  Cornell Multitask Toolbox for MATLAB
  http://www.tc.cornell.edu/Services/Software/CMTM/
  
  Beolab Toolbox for v6.5
  Thomas Abrahamsson (Professor, Chalmers University of Technology, Applied Mechanics, Göteborg, Sweden)
  http://www.mathworks.nl/matlabcentral/fileexchange/loadFile.do?objectId=1216&objectType=file
  
  PARMATLAB
  
  
  Neural Networks (Top)
  
  SOM Toolbox
  http://www.cis.hut.fi/projects/somtoolbox/
  
  Bayes Net Toolbox for Matlab
  http://www.ai.mit.edu/~murphyk/Software/BNT/bnt.html
  
  NetLab
  http://www.ncrg.aston.ac.uk/netlab/
  
  Random Neural Networks
  http://www.cs.ucf.edu/~ahossam/rnnsimv2/
  ftp: ftp://ftp.mathworks.com/pub/contrib/v5/nnet/rnnsimv2/
  
  NNSYSID Toolbox (tools for neural network based identification of nonlinear dynamic systems)
  http://www.iau.dtu.dk/research/control/nnsysid.html
  
  Oceanography (Top)
  
  WAFO. Wave Analysis for Fatigue and Oceanography
  http://www.maths.lth.se/matstat/wafo/
  
  ADCP toolbox for MATLAB (USGS, USA)
  Presented at the Hydroacoustics Workshop in Tampa and at ADCP's in Action in San Diego
  http://woodshole.er.usgs.gov/operations/stg/pubs/ADCPtools
  
  
  SEA-MAT - Matlab Tools for Oceanographic Analysis
  A collaborative effort to organize and distribute Matlab tools for the Oceanographic Community
  http://sea-mat.whoi.edu/
  
  Ocean Toolbox
  http://www.mar.dfo-mpo.gc.ca/science/ocean/epsonde/programming.html
  
  EUGENE D. GALLAGHER
  (Associate Professor, Environmental, Coastal & Ocean Sciences)
  http://www.es.umb.edu/edgwebp.htm
  
  Optimization (Top)
  
  MODCONS - a MATLAB Toolbox for Multi-Objective Control System Design
  http://www.eee.kcl.ac.uk/mecheng/jfw/modcons.html
  
  Lazy Learning Package
  http://iridia.ulb.ac.be/~lazy/
  
  SDPT3 version 3.02 -- a MATLAB software for semidefinite-quadratic-linear programming
  http://www.math.nus.edu.sg/~mattohkc/sdpt3.html
  
  Minimum Enclosing Balls: Matlab Code
  http://www.compgeom.com/meb/
  
  
  SOSTOOLS Sum of Squares Optimization Toolbox for MATLAB User’s guide
  http://www.cds.caltech.edu/sostools/sostools.pdf
  
  PSOt - a Particle Swarm Optimization Toolbox for use with Matlab
  By Brian Birge ... A Particle Swarm Optimization Toolbox (PSOt) for use with the Matlab scientific programming environment has been developed. PSO is
  introduced briefly and then the use of the toolbox is explained with some examples. A link to downloadable code is provided.
  
  Plot
  
  http://globec.whoi.edu/software/plotting/gbplot/
  
  Signal Processing (Top)
  
  Filter Design with Motorola DSP56K
  http://www.ee.ryerson.ca:8080/~mzeytin/dfp/index.html
  
  Change Detection and Adaptive Filtering Toolbox
  http://www.sigmoid.se/
  
  Signal Processing Toolbox
  http://www.mathworks.com/products/signal/
  
  ICA TU Toolbox
  http://mole.imm.dtu.dk/toolbox/menu.html
  
  Time-Frequency Toolbox for Matlab
  http://crttsn.univ-nantes.fr/~auger/tftb.html
  
  VoiceBox - Speech Processing Toolbox
  http://www.ee.ic.ac.uk/hp/staff/dmb/voicebox/voicebox.html
  
  Least Squared - Support Vector Machines (LS-SVM)
  http://www.esat.kuleuven.ac.be/sista/lssvmlab/
  
  WaveLab802 : the Wavelet Toolbox
  By David Donoho, Mark Reynold Duncan, Xiaoming Huo, Ofer Levi
  http://www-stat.stanford.edu/~wavelab/
  
  Time-series Matlab scripts
  http://wise-obs.tau.ac.il/~eran/MATLAB/TimeseriesCon.html
  
  Uvi_Wave Wavelet Toolbox Home Page
  http://www.gts.tsc.uvigo.es/~wavelets/index.html
  
  Another
  
  Support Vector Machine (Top)
  
  MATLAB Support Vector Machine Toolbox
  Dr Gavin Cawley
  School of Information Systems, University of East Anglia
  http://theoval.sys.uea.ac.uk/~gcc/svm/toolbox/
  
  LS-SVM - SISTA
  
  SVM toolboxes
  http://www.cs.wisc.edu/dmi/svm/
  
  LSVM Lagrangian Support Vector Machine
  http://www.cs.wisc.edu/dmi/lsvm/
  
  Statistics (Top)
  
  Logistic regression
  http://www.spatial-econometrics.com/
  
  SAGA
  http://globec.whoi.edu/software/saga/
  
  Multi-Parametric Toolbox (MPT) A tool (not only) for multi-parametric optimization.
  http://control.ee.ethz.ch/~mpt/
  
  ARfit: A Matlab package for the estimation of parameters and eigenmodes of multivariate autoregressive models
  http://www.mat.univie.ac.at/~neum/software/arfit/
  
  The Dimensional Analysis Toolbox for MATLAB
  Home: http://www.sbrs.de/
  Paper: http://www.isd.uni-stuttgart.de/~brueckner/Papers/similarity2002.pdf
  
  FATHOM for Matlab
  http://www.rsmas.miami.edu/personal/djones/
  
  PLS-toolbox
  http://www.eigenvector.com/
  
  Multivariate analysis toolbox (N-way Toolbox - paper)
  http://www.models.kvl.dk/source/nwaytoolbox/index.asp
  
  Classification Toolbox for Matlab
  http://tiger.technion.ac.il/~eladyt/classification/index.htm
  
  Matlab toolbox for Robust Calibration
  http://www.wis.kuleuven.ac.be/stat/robust/toolbox.html
  
  Statistical Parametric Mapping
  http://www.fil.ion.ucl.ac.uk/spm/spm2.html
  
  EVIM: A Software Package for Extreme Value Analysis in Matlab
  by Ramazan Gençay, Faruk Selcuk and Abdurrahman Ulugulyagci, 2001.
  Manual (pdf file) evim.pdf - Software (zip file) evim.zip
  
  Time Series Analysis
  http://www.dpmi.tu-graz.ac.at/~schloegl/matlab/tsa/
  
  Bayes Net Toolbox for Matlab
  Written by Kevin Murphy
  http://www.ai.mit.edu/~murphyk/Software/BNT/bnt.html
  Other: http://www.isp.pitt.edu/information/toolboxes.html
  
  ARfit: A Matlab package for the estimation of parameters and eigenmodes of multivariate autoregressive models
  http://www.gps.caltech.edu/~tapio/arfit/
  
  M-Fit
  http://www.ill.fr/tas/matlab/doc/mfit4/mfit.html
  
  Dimensional Analysis Toolbox for Matlab
  http://www.sbrs.net/
  
  The NaN-toolbox: A statistic-toolbox for Octave and Matlab®
  ... handles data with and without MISSING VALUES.
  http://www-dpmi.tu-graz.ac.at/~schloegl/matlab/NaN/
  
  Iterative Methods for Optimization: Matlab Codes
  http://www4.ncsu.edu/~ctk/matlab_darts.html
  
  Multiscale Shape Analysis (MSA) Matlab Toolbox 2000
  http://www.vision.ime.usp.br/~cesar/projects/multiscale/
  
  Multivariate Ecological & Oceanographic Data Analysis (FATHOM)
  From David Jones
  http://www.rsmas.miami.edu/personal/djones/
  
  glmlab (Generalized Linear Models in MATLA
  http://www.sci.usq.edu.au/staff/dunn/glmlab/glmlab.html
  
  Spacial and Geometric Analysis (SaGA) toolbox
  Interesting audio links with FAQ, VC++, on the topic