COG Practise

$mkdir -p /home/sicong/new/cog_practise

$cd /home/sicong/new/cog_practise

$perl -p -i -e 's/-max_target_seqs 20//g' /home/sicong/文档/chenlianfu/blast.pl

$blast.pl blastp cog ../Trinity.fasta 1e-5 4 cog 5

$cog_from_xml.pl cog.xml 1e-5

$cog_R.pl cog_cog_class_annot.xls cog NC

$blast.pl blastp kog ../Trinity.fasta 1e-5 4 kog 5

$kog_from_xml.pl kog.xml 1e-5

$kog_R.pl kog_kog_class_annot.xls kog NC