libdai application

1.download

git clone https://bitbucket.org/jorism/libdai.git

2. prerequired:

a)boost

b)libgmp-dev

3. copy Makefile.Linux --- Makefile.conf

4. make

ThinkPad-T430:~/Fpxstudio/Research/libDAI$ make
g++ -Iinclude -Wno-deprecated -Wall -W -Wextra -fpic -O3 -g -DDAI_DEBUG  -DDAI_WITH_BP -DDAI_WITH_FBP -DDAI_WITH_TRWBP -DDAI_WITH_MF -DDAI_WITH_HAK -DDAI_WITH_LC -DDAI_WITH_TREEEP -DDAI_WITH_JTREE -DDAI_WITH_MR -DDAI_WITH_GIBBS -DDAI_WITH_CBP -DDAI_WITH_DECMAP -Llib -c src/graph.cpp
g++ -Iinclude -Wno-deprecated -Wall -W -Wextra -fpic -O3 -g -DDAI_DEBUG  -DDAI_WITH_BP -DDAI_WITH_FBP -DDAI_WITH_TRWBP -DDAI_WITH_MF -DDAI_WITH_HAK -DDAI_WITH_LC -DDAI_WITH_TREEEP -DDAI_WITH_JTREE -DDAI_WITH_MR -DDAI_WITH_GIBBS -DDAI_WITH_CBP -DDAI_WITH_DECMAP -Llib -c src/dag.cpp
g++ -Iinclude -Wno-deprecated -Wall -W -Wextra -fpic -O3 -g -DDAI_DEBUG  -DDAI_WITH_BP -DDAI_WITH_FBP -DDAI_WITH_TRWBP -DDAI_WITH_MF -DDAI_WITH_HAK -DDAI_WITH_LC -DDAI_WITH_TREEEP -DDAI_WITH_JTREE -DDAI_WITH_MR -DDAI_WITH_GIBBS -DDAI_WITH_CBP -DDAI_WITH_DECMAP -Llib -c src/bipgraph.cpp
g++ -Iinclude -Wno-deprecated -Wall -W -Wextra -fpic -O3 -g -DDAI_DEBUG  -DDAI_WITH_BP -DDAI_WITH_FBP -DDAI_WITH_TRWBP -DDAI_WITH_MF -DDAI_WITH_HAK -DDAI_WITH_LC -DDAI_WITH_TREEEP -DDAI_WITH_JTREE -DDAI_WITH_MR -DDAI_WITH_GIBBS -DDAI_WITH_CBP -DDAI_WITH_DECMAP -Llib -c src/varset.cpp
g++ -Iinclude -Wno-deprecated -Wall -W -Wextra -fpic -O3 -g -DDAI_DEBUG  -DDAI_WITH_BP -DDAI_WITH_FBP -DDAI_WITH_TRWBP -DDAI_WITH_MF -DDAI_WITH_HAK -DDAI_WITH_LC -DDAI_WITH_TREEEP -DDAI_WITH_JTREE -DDAI_WITH_MR -DDAI_WITH_GIBBS -DDAI_WITH_CBP -DDAI_WITH_DECMAP -Llib -c src/daialg.cpp
g++ -Iinclude -Wno-deprecated -Wall -W -Wextra -fpic -O3 -g -DDAI_DEBUG  -DDAI_WITH_BP -DDAI_WITH_FBP -DDAI_WITH_TRWBP -DDAI_WITH_MF -DDAI_WITH_HAK -DDAI_WITH_LC -DDAI_WITH_TREEEP -DDAI_WITH_JTREE -DDAI_WITH_MR -DDAI_WITH_GIBBS -DDAI_WITH_CBP -DDAI_WITH_DECMAP -Llib -c src/alldai.cpp
g++ -Iinclude -Wno-deprecated -Wall -W -Wextra -fpic -O3 -g -DDAI_DEBUG  -DDAI_WITH_BP -DDAI_WITH_FBP -DDAI_WITH_TRWBP -DDAI_WITH_MF -DDAI_WITH_HAK -DDAI_WITH_LC -DDAI_WITH_TREEEP -DDAI_WITH_JTREE -DDAI_WITH_MR -DDAI_WITH_GIBBS -DDAI_WITH_CBP -DDAI_WITH_DECMAP -Llib -c src/clustergraph.cpp
g++ -Iinclude -Wno-deprecated -Wall -W -Wextra -fpic -O3 -g -DDAI_DEBUG  -DDAI_WITH_BP -DDAI_WITH_FBP -DDAI_WITH_TRWBP -DDAI_WITH_MF -DDAI_WITH_HAK -DDAI_WITH_LC -DDAI_WITH_TREEEP -DDAI_WITH_JTREE -DDAI_WITH_MR -DDAI_WITH_GIBBS -DDAI_WITH_CBP -DDAI_WITH_DECMAP -Llib -c src/factor.cpp
g++ -Iinclude -Wno-deprecated -Wall -W -Wextra -fpic -O3 -g -DDAI_DEBUG  -DDAI_WITH_BP -DDAI_WITH_FBP -DDAI_WITH_TRWBP -DDAI_WITH_MF -DDAI_WITH_HAK -DDAI_WITH_LC -DDAI_WITH_TREEEP -DDAI_WITH_JTREE -DDAI_WITH_MR -DDAI_WITH_GIBBS -DDAI_WITH_CBP -DDAI_WITH_DECMAP -Llib -c src/factorgraph.cpp
g++ -Iinclude -Wno-deprecated -Wall -W -Wextra -fpic -O3 -g -DDAI_DEBUG  -DDAI_WITH_BP -DDAI_WITH_FBP -DDAI_WITH_TRWBP -DDAI_WITH_MF -DDAI_WITH_HAK -DDAI_WITH_LC -DDAI_WITH_TREEEP -DDAI_WITH_JTREE -DDAI_WITH_MR -DDAI_WITH_GIBBS -DDAI_WITH_CBP -DDAI_WITH_DECMAP -Llib -c src/properties.cpp
g++ -Iinclude -Wno-deprecated -Wall -W -Wextra -fpic -O3 -g -DDAI_DEBUG  -DDAI_WITH_BP -DDAI_WITH_FBP -DDAI_WITH_TRWBP -DDAI_WITH_MF -DDAI_WITH_HAK -DDAI_WITH_LC -DDAI_WITH_TREEEP -DDAI_WITH_JTREE -DDAI_WITH_MR -DDAI_WITH_GIBBS -DDAI_WITH_CBP -DDAI_WITH_DECMAP -Llib -c src/regiongraph.cpp
g++ -Iinclude -Wno-deprecated -Wall -W -Wextra -fpic -O3 -g -DDAI_DEBUG  -DDAI_WITH_BP -DDAI_WITH_FBP -DDAI_WITH_TRWBP -DDAI_WITH_MF -DDAI_WITH_HAK -DDAI_WITH_LC -DDAI_WITH_TREEEP -DDAI_WITH_JTREE -DDAI_WITH_MR -DDAI_WITH_GIBBS -DDAI_WITH_CBP -DDAI_WITH_DECMAP -Llib -c src/util.cpp
g++ -Iinclude -Wno-deprecated -Wall -W -Wextra -fpic -O3 -g -DDAI_DEBUG  -DDAI_WITH_BP -DDAI_WITH_FBP -DDAI_WITH_TRWBP -DDAI_WITH_MF -DDAI_WITH_HAK -DDAI_WITH_LC -DDAI_WITH_TREEEP -DDAI_WITH_JTREE -DDAI_WITH_MR -DDAI_WITH_GIBBS -DDAI_WITH_CBP -DDAI_WITH_DECMAP -Llib -c src/weightedgraph.cpp
g++ -Iinclude -Wno-deprecated -Wall -W -Wextra -fpic -O3 -g -DDAI_DEBUG  -DDAI_WITH_BP -DDAI_WITH_FBP -DDAI_WITH_TRWBP -DDAI_WITH_MF -DDAI_WITH_HAK -DDAI_WITH_LC -DDAI_WITH_TREEEP -DDAI_WITH_JTREE -DDAI_WITH_MR -DDAI_WITH_GIBBS -DDAI_WITH_CBP -DDAI_WITH_DECMAP -Llib -c src/exceptions.cpp
g++ -Iinclude -Wno-deprecated -Wall -W -Wextra -fpic -O3 -g -DDAI_DEBUG  -DDAI_WITH_BP -DDAI_WITH_FBP -DDAI_WITH_TRWBP -DDAI_WITH_MF -DDAI_WITH_HAK -DDAI_WITH_LC -DDAI_WITH_TREEEP -DDAI_WITH_JTREE -DDAI_WITH_MR -DDAI_WITH_GIBBS -DDAI_WITH_CBP -DDAI_WITH_DECMAP -Llib -c src/exactinf.cpp
g++ -Iinclude -Wno-deprecated -Wall -W -Wextra -fpic -O3 -g -DDAI_DEBUG  -DDAI_WITH_BP -DDAI_WITH_FBP -DDAI_WITH_TRWBP -DDAI_WITH_MF -DDAI_WITH_HAK -DDAI_WITH_LC -DDAI_WITH_TREEEP -DDAI_WITH_JTREE -DDAI_WITH_MR -DDAI_WITH_GIBBS -DDAI_WITH_CBP -DDAI_WITH_DECMAP -Llib -c src/evidence.cpp
g++ -Iinclude -Wno-deprecated -Wall -W -Wextra -fpic -O3 -g -DDAI_DEBUG  -DDAI_WITH_BP -DDAI_WITH_FBP -DDAI_WITH_TRWBP -DDAI_WITH_MF -DDAI_WITH_HAK -DDAI_WITH_LC -DDAI_WITH_TREEEP -DDAI_WITH_JTREE -DDAI_WITH_MR -DDAI_WITH_GIBBS -DDAI_WITH_CBP -DDAI_WITH_DECMAP -Llib -c src/emalg.cpp
g++ -Iinclude -Wno-deprecated -Wall -W -Wextra -fpic -O3 -g -DDAI_DEBUG  -DDAI_WITH_BP -DDAI_WITH_FBP -DDAI_WITH_TRWBP -DDAI_WITH_MF -DDAI_WITH_HAK -DDAI_WITH_LC -DDAI_WITH_TREEEP -DDAI_WITH_JTREE -DDAI_WITH_MR -DDAI_WITH_GIBBS -DDAI_WITH_CBP -DDAI_WITH_DECMAP -Llib -c src/io.cpp
g++ -Iinclude -Wno-deprecated -Wall -W -Wextra -fpic -O3 -g -DDAI_DEBUG  -DDAI_WITH_BP -DDAI_WITH_FBP -DDAI_WITH_TRWBP -DDAI_WITH_MF -DDAI_WITH_HAK -DDAI_WITH_LC -DDAI_WITH_TREEEP -DDAI_WITH_JTREE -DDAI_WITH_MR -DDAI_WITH_GIBBS -DDAI_WITH_CBP -DDAI_WITH_DECMAP -Llib -c src/bp.cpp
g++ -Iinclude -Wno-deprecated -Wall -W -Wextra -fpic -O3 -g -DDAI_DEBUG  -DDAI_WITH_BP -DDAI_WITH_FBP -DDAI_WITH_TRWBP -DDAI_WITH_MF -DDAI_WITH_HAK -DDAI_WITH_LC -DDAI_WITH_TREEEP -DDAI_WITH_JTREE -DDAI_WITH_MR -DDAI_WITH_GIBBS -DDAI_WITH_CBP -DDAI_WITH_DECMAP -Llib -c src/fbp.cpp
g++ -Iinclude -Wno-deprecated -Wall -W -Wextra -fpic -O3 -g -DDAI_DEBUG  -DDAI_WITH_BP -DDAI_WITH_FBP -DDAI_WITH_TRWBP -DDAI_WITH_MF -DDAI_WITH_HAK -DDAI_WITH_LC -DDAI_WITH_TREEEP -DDAI_WITH_JTREE -DDAI_WITH_MR -DDAI_WITH_GIBBS -DDAI_WITH_CBP -DDAI_WITH_DECMAP -Llib -c src/trwbp.cpp
g++ -Iinclude -Wno-deprecated -Wall -W -Wextra -fpic -O3 -g -DDAI_DEBUG  -DDAI_WITH_BP -DDAI_WITH_FBP -DDAI_WITH_TRWBP -DDAI_WITH_MF -DDAI_WITH_HAK -DDAI_WITH_LC -DDAI_WITH_TREEEP -DDAI_WITH_JTREE -DDAI_WITH_MR -DDAI_WITH_GIBBS -DDAI_WITH_CBP -DDAI_WITH_DECMAP -Llib -c src/mf.cpp
g++ -Iinclude -Wno-deprecated -Wall -W -Wextra -fpic -O3 -g -DDAI_DEBUG  -DDAI_WITH_BP -DDAI_WITH_FBP -DDAI_WITH_TRWBP -DDAI_WITH_MF -DDAI_WITH_HAK -DDAI_WITH_LC -DDAI_WITH_TREEEP -DDAI_WITH_JTREE -DDAI_WITH_MR -DDAI_WITH_GIBBS -DDAI_WITH_CBP -DDAI_WITH_DECMAP -Llib -c src/hak.cpp
g++ -Iinclude -Wno-deprecated -Wall -W -Wextra -fpic -O3 -g -DDAI_DEBUG  -DDAI_WITH_BP -DDAI_WITH_FBP -DDAI_WITH_TRWBP -DDAI_WITH_MF -DDAI_WITH_HAK -DDAI_WITH_LC -DDAI_WITH_TREEEP -DDAI_WITH_JTREE -DDAI_WITH_MR -DDAI_WITH_GIBBS -DDAI_WITH_CBP -DDAI_WITH_DECMAP -Llib -c src/lc.cpp
g++ -Iinclude -Wno-deprecated -Wall -W -Wextra -fpic -O3 -g -DDAI_DEBUG  -DDAI_WITH_BP -DDAI_WITH_FBP -DDAI_WITH_TRWBP -DDAI_WITH_MF -DDAI_WITH_HAK -DDAI_WITH_LC -DDAI_WITH_TREEEP -DDAI_WITH_JTREE -DDAI_WITH_MR -DDAI_WITH_GIBBS -DDAI_WITH_CBP -DDAI_WITH_DECMAP -Llib -c src/treeep.cpp
g++ -Iinclude -Wno-deprecated -Wall -W -Wextra -fpic -O3 -g -DDAI_DEBUG  -DDAI_WITH_BP -DDAI_WITH_FBP -DDAI_WITH_TRWBP -DDAI_WITH_MF -DDAI_WITH_HAK -DDAI_WITH_LC -DDAI_WITH_TREEEP -DDAI_WITH_JTREE -DDAI_WITH_MR -DDAI_WITH_GIBBS -DDAI_WITH_CBP -DDAI_WITH_DECMAP -Llib -c src/jtree.cpp
g++ -Iinclude -Wno-deprecated -Wall -W -Wextra -fpic -O3 -g -DDAI_DEBUG  -DDAI_WITH_BP -DDAI_WITH_FBP -DDAI_WITH_TRWBP -DDAI_WITH_MF -DDAI_WITH_HAK -DDAI_WITH_LC -DDAI_WITH_TREEEP -DDAI_WITH_JTREE -DDAI_WITH_MR -DDAI_WITH_GIBBS -DDAI_WITH_CBP -DDAI_WITH_DECMAP -Llib -c src/mr.cpp
g++ -Iinclude -Wno-deprecated -Wall -W -Wextra -fpic -O3 -g -DDAI_DEBUG  -DDAI_WITH_BP -DDAI_WITH_FBP -DDAI_WITH_TRWBP -DDAI_WITH_MF -DDAI_WITH_HAK -DDAI_WITH_LC -DDAI_WITH_TREEEP -DDAI_WITH_JTREE -DDAI_WITH_MR -DDAI_WITH_GIBBS -DDAI_WITH_CBP -DDAI_WITH_DECMAP -Llib -c src/gibbs.cpp
g++ -Iinclude -Wno-deprecated -Wall -W -Wextra -fpic -O3 -g -DDAI_DEBUG  -DDAI_WITH_BP -DDAI_WITH_FBP -DDAI_WITH_TRWBP -DDAI_WITH_MF -DDAI_WITH_HAK -DDAI_WITH_LC -DDAI_WITH_TREEEP -DDAI_WITH_JTREE -DDAI_WITH_MR -DDAI_WITH_GIBBS -DDAI_WITH_CBP -DDAI_WITH_DECMAP -Llib -c src/bbp.cpp
g++ -Iinclude -Wno-deprecated -Wall -W -Wextra -fpic -O3 -g -DDAI_DEBUG  -DDAI_WITH_BP -DDAI_WITH_FBP -DDAI_WITH_TRWBP -DDAI_WITH_MF -DDAI_WITH_HAK -DDAI_WITH_LC -DDAI_WITH_TREEEP -DDAI_WITH_JTREE -DDAI_WITH_MR -DDAI_WITH_GIBBS -DDAI_WITH_CBP -DDAI_WITH_DECMAP -Llib -c src/cbp.cpp
g++ -Iinclude -Wno-deprecated -Wall -W -Wextra -fpic -O3 -g -DDAI_DEBUG  -DDAI_WITH_BP -DDAI_WITH_FBP -DDAI_WITH_TRWBP -DDAI_WITH_MF -DDAI_WITH_HAK -DDAI_WITH_LC -DDAI_WITH_TREEEP -DDAI_WITH_JTREE -DDAI_WITH_MR -DDAI_WITH_GIBBS -DDAI_WITH_CBP -DDAI_WITH_DECMAP -Llib -c src/bp_dual.cpp
g++ -Iinclude -Wno-deprecated -Wall -W -Wextra -fpic -O3 -g -DDAI_DEBUG  -DDAI_WITH_BP -DDAI_WITH_FBP -DDAI_WITH_TRWBP -DDAI_WITH_MF -DDAI_WITH_HAK -DDAI_WITH_LC -DDAI_WITH_TREEEP -DDAI_WITH_JTREE -DDAI_WITH_MR -DDAI_WITH_GIBBS -DDAI_WITH_CBP -DDAI_WITH_DECMAP -Llib -c src/decmap.cpp
mkdir -p lib
ar rcus lib/libdai.a graph.o dag.o bipgraph.o varset.o daialg.o alldai.o clustergraph.o factor.o factorgraph.o properties.o regiongraph.o util.o weightedgraph.o exceptions.o exactinf.o evidence.o emalg.o io.o bp.o fbp.o trwbp.o mf.o hak.o lc.o treeep.o jtree.o mr.o gibbs.o bbp.o cbp.o bp_dual.o decmap.o
ar: `u' 修饰符被忽略，因为 `D' 为默认（参见 `U'）
g++ -Iinclude -Wno-deprecated -Wall -W -Wextra -fpic -O3 -g -DDAI_DEBUG  -DDAI_WITH_BP -DDAI_WITH_FBP -DDAI_WITH_TRWBP -DDAI_WITH_MF -DDAI_WITH_HAK -DDAI_WITH_LC -DDAI_WITH_TREEEP -DDAI_WITH_JTREE -DDAI_WITH_MR -DDAI_WITH_GIBBS -DDAI_WITH_CBP -DDAI_WITH_DECMAP -Llib -otests/testdai tests/testdai.cpp -ldai -lgmpxx -lgmp -lboost_program_options-mt
/usr/bin/ld: 找不到 -lboost_program_options-mt
collect2: error: ld returned 1 exit status
Makefile:227: recipe for target 'tests/testdai' failed
make: *** [tests/testdai] Error 1